View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19202_high_3 (Length: 364)
Name: NF19202_high_3
Description: NF19202
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19202_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 336; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 1 - 352
Target Start/End: Complemental strand, 46632634 - 46632283
Alignment:
| Q |
1 |
aagggtgatttgattcatctgtttctgatatagcagaatagcactgaggactgctttgagctgtactgaagcaatcctcaaaatggccactgcatgcttt |
100 |
Q |
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| T |
46632634 |
aagggtgatttgattcatctgtttttgatatagcagaatagcattgaggactgctttgagctgtactgaagcaatcctcaaaatggccactgcatgcttt |
46632535 |
T |
|
| Q |
101 |
tggactcaattctgttaaagctgatggagctggtgatactttgtagttttcttctttcgtgtaggaaccatttatggaatatctattttcagattgctca |
200 |
Q |
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| T |
46632534 |
tggactcaattctgttaaagctgatggagctggtgatactttgtagttttcttctttcgtataggaaccatttatggaatatctattttcagattgctca |
46632435 |
T |
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| Q |
201 |
taatgttgtctatttacactgctgcttctgcttgtagagttgccttttgattcacaaaaatccatctccacaattttgatgttgtcttccaagcctctgt |
300 |
Q |
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| T |
46632434 |
taatgttgtctatttacactgctgcttctgcttgtagagttgccttttgattcacaaaaatccatctccacaattttgatgttgtcttccaagcctctgt |
46632335 |
T |
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| Q |
301 |
ccatttcctacatgcacaaaaccgaatttcatgactataactacttcatatt |
352 |
Q |
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| T |
46632334 |
ccatttcctacatgcacaaaaccgaatttcatgactagaactacttcatatt |
46632283 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 56; Significance: 4e-23; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 140 - 273
Target Start/End: Complemental strand, 11979843 - 11979706
Alignment:
| Q |
140 |
tttgtagttttcttctttcgtgtaggaaccatttatggaatatctattttcagattgctcataatgt---tgtctatt-tacactgctgcttctgcttgt |
235 |
Q |
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| T |
11979843 |
tttgtatttttcttcttttgagtaggaaccatttgtggaatatctatgttcaaattgttcataatgtccatttgtaatatacactgttgcttctgcttgc |
11979744 |
T |
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| Q |
236 |
agagttgccttttgattcacaaaaatccatctccacaa |
273 |
Q |
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| T |
11979743 |
agaattaccatttgattcacaaaaatccatctccacaa |
11979706 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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