View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19202_low_1 (Length: 509)
Name: NF19202_low_1
Description: NF19202
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19202_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 473; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 473; E-Value: 0
Query Start/End: Original strand, 9 - 501
Target Start/End: Original strand, 14281195 - 14281687
Alignment:
| Q |
9 |
acatcatcaaggagatagatgtcactgtcttgatatacagctctagcaagttgtatgcgttgtttctggcctccgctgaggttaataccgcgctctccaa |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14281195 |
acatcatcaaggagatagatgtcactgtcttgatatacagctctagcaagttgtatgcgttgtttctggcctccgctgaggttaataccgcgctctccaa |
14281294 |
T |
|
| Q |
109 |
tctcagtttcgtcaccatattccatcatttcaagatccttttcaaggcagcacactcttaaagcttctttgtacttttccatgttcattggtaaaccaaa |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
14281295 |
tctcagtttcgtcaccatattccatcatttcaagatccttttcaaggcagcacactcttaaagcttctttgtacttttccatgttcattggtaaaccaaa |
14281394 |
T |
|
| Q |
209 |
caatatgttttctttgatggttgcattctgaatccatgatgtctgtgctacatatgccgtcgtcccacaaactctagcctgtcatattttacaagtaatg |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
14281395 |
caatatgttttctttgatggttgcattctgaatccatgatgtctgtgctacatatgccgtcgtcccacaaactctagcctgtaatattttacaagtaatg |
14281494 |
T |
|
| Q |
309 |
atgacatctactaatgataaaggcaacttttcacagaacaacattgactaatcgattaaatgtttttgaatacatttgaaaagcatagtcatgaattctt |
408 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14281495 |
atgacatctactaatgataaaggcaacttttcacagaacaacatggactaatcgattaaatgtttttgaatacatttgaaaagcatagtcatgaattctt |
14281594 |
T |
|
| Q |
409 |
gtaacaaaagcacactcactaatgcttatgctcatagataaataaacaaatctaaatagtccctactttcagaagaattagctttgatgcatt |
501 |
Q |
| |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||| |
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| T |
14281595 |
gtaacaaaagcagactcactaatgcttatgctcatagataaataaacaaatctaaatagtccctactgtcacaagaattagctttgatgcatt |
14281687 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 9 - 290
Target Start/End: Original strand, 14302579 - 14302860
Alignment:
| Q |
9 |
acatcatcaaggagatagatgtcactgtcttgatatacagctctagcaagttgtatgcgttgtttctggcctccgctgaggttaataccgcgctctccaa |
108 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| || ||||||||||||||||||||||||| |
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|
| T |
14302579 |
acatcatcaaggagatagatgtcactgtcctgatatacagctctagcaagttgtatgcgctgtttctggccgccactgaggttaataccgcgctctccaa |
14302678 |
T |
|
| Q |
109 |
tctcagtttcgtcaccatattccatcatttcaagatccttttcaaggcagcacactcttaaagcttctttgtacttttccatgttcattggtaaaccaaa |
208 |
Q |
| |
|
|||| ||||||||||||| |||||||||| |||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||| |||||||| |
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| T |
14302679 |
tctcggtttcgtcaccatcttccatcattacaagatccttttcaaggcagcacactcttagagcttccttgtacttttccatgttcattggcaaaccaaa |
14302778 |
T |
|
| Q |
209 |
caatatgttttctttgatggttgcattctgaatccatgatgtctgtgctacatatgccgtcgtcccacaaactctagcctgt |
290 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||| |
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| T |
14302779 |
caatatgttttctttgatggttgcattctgaatccatgatgtttgtgctacatatgccgtcgtcccacaaactctaacctgt |
14302860 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 9 - 413
Target Start/End: Original strand, 14319027 - 14319427
Alignment:
| Q |
9 |
acatcatcaaggagatagatgtcactgtcttgatatacagctctagcaagttgtatgcgttgtttctggcctccgctgaggttaataccgcgctctccaa |
108 |
Q |
| |
|
|||||||||||||||||||||||| |||| ||||||||||||||||||||||||| |||||||||||||| || |||||||||||||| |||||||||| |
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|
| T |
14319027 |
acatcatcaaggagatagatgtcagtgtcatgatatacagctctagcaagttgtacccgttgtttctggccaccactgaggttaatacctcgctctccaa |
14319126 |
T |
|
| Q |
109 |
tctcagtttcgtcaccatattccatcatttcaagatccttttcaaggcagcacactcttaaagcttctttgtacttttccatgttcattggtaaaccaaa |
208 |
Q |
| |
|
|||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||| |||||||||||| ||||| |
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|
| T |
14319127 |
tctcagtttcatcaccatcttccatcatttcaagatccttttcaaggcagcacactcttaaagtttccctgtacttttccaagttcattggtaagccaaa |
14319226 |
T |
|
| Q |
209 |
caatatgttttctttgatggttgcattctgaatccatgatgtctgtgctacatatgccgtcgtcccacaaactctagcctgtcatattttacaagtaatg |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| | ||||||||||||||| |
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|
| T |
14319227 |
caatatgttttctttgatggttgcattctgaatccatgatgtttgtgctacatatgccgtcgtcccacaaactctgacctgtaagattttacaagtaatg |
14319326 |
T |
|
| Q |
309 |
atgacatctactaatgataaaggcaacttttcacagaacaacattgactaatcgattaaatgtttttgaatacatttgaaaagcatagtcatgaattctt |
408 |
Q |
| |
|
|| | | | || |||||| | || ||||||||| ||||| || || | || ||||||||| ||| ||||||| |||| |||||||||||||||| |
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| T |
14319327 |
atcataattgtaaaagataaaagtaaattttcacag---cacattcacaaaacaataaaatgttttcgaacacatttg-aaagtatagtcatgaattctt |
14319422 |
T |
|
| Q |
409 |
gtaac |
413 |
Q |
| |
|
||||| |
|
|
| T |
14319423 |
gtaac |
14319427 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 366 - 449
Target Start/End: Original strand, 14302867 - 14302950
Alignment:
| Q |
366 |
aaatgtttttgaatacatttgaaaagcatagtcatgaattcttgtaacaaaagcacactcactaatgcttatgctcatagataa |
449 |
Q |
| |
|
|||| ||||| |||||||||||||||||||||||| |||||||| ||||||| || ||||| |||| ||||||| |||||||| |
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|
| T |
14302867 |
aaatctttttcaatacatttgaaaagcatagtcataaattcttgcaacaaaaacagtctcacaaatgtttatgctaatagataa |
14302950 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 175; Significance: 5e-94; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 175; E-Value: 5e-94
Query Start/End: Original strand, 11 - 281
Target Start/End: Original strand, 25884210 - 25884480
Alignment:
| Q |
11 |
atcatcaaggagatagatgtcactgtcttgatatacagctctagcaagttgtatgcgttgtttctggcctccgctgaggttaataccgcgctctccaatc |
110 |
Q |
| |
|
|||||||||||||||||||||| |||| ||||| ||||||||||| ||||| | ||||||||||||||||| ||||||||||||||||| ||||||||| |
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|
| T |
25884210 |
atcatcaaggagatagatgtcagtgtcctgatacacagctctagctagttgcacacgttgtttctggcctccactgaggttaataccgcgttctccaatc |
25884309 |
T |
|
| Q |
111 |
tcagtttcgtcaccatattccatcatttcaagatccttttcaaggcagcacactcttaaagcttctttgtacttttccatgttcattggtaaaccaaaca |
210 |
Q |
| |
|
|| ||| | ||||||| |||||||||||||||||||||||||||||||||||| ||||||||||| ||||||| |||| ||||||||||||||| |||| |
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|
| T |
25884310 |
tcggttccatcaccatcttccatcatttcaagatccttttcaaggcagcacacccttaaagcttccctgtacttgtccaagttcattggtaaaccgaaca |
25884409 |
T |
|
| Q |
211 |
atatgttttctttgatggttgcattctgaatccatgatgtctgtgctacatatgccgtcgtcccacaaact |
281 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||| || || |||||||| ||||||||| |
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|
| T |
25884410 |
atatgttttctttgatggttgcattctgaatccatgatgtttgtgccacgtacgccgtcgttccacaaact |
25884480 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 9 - 210
Target Start/End: Original strand, 39664818 - 39665019
Alignment:
| Q |
9 |
acatcatcaaggagatagatgtcactgtcttgatatacagctctagcaagttgtatgcgttgtttctggcctccgctgaggttaataccgcgctctccaa |
108 |
Q |
| |
|
||||||||||| ||||| ||||||| |||||| |||||||||| |||||||| || || || ||||| || || || ||||| || || |||||||||| |
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|
| T |
39664818 |
acatcatcaagaagatatatgtcacagtcttggtatacagctcgtgcaagttgaatacgctgcttctgaccgccactaaggtttatgccacgctctccaa |
39664917 |
T |
|
| Q |
109 |
tctcagtttcgtcaccatattccatcatttcaagatccttttcaaggcagcacactcttaaagcttctttgtacttttccatgttcattggtaaaccaaa |
208 |
Q |
| |
|
|||| || | || |||||||||||||||| | || ||||| | ||| || ||||| | | ||| |||||||||| ||||||||||||||||||| |
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|
| T |
39664918 |
tctctgtctgatccccatattccatcatttgtaagtctttttccaagcaacaaactctgataatttcattgtacttttgtctgttcattggtaaaccaaa |
39665017 |
T |
|
| Q |
209 |
ca |
210 |
Q |
| |
|
|| |
|
|
| T |
39665018 |
ca |
39665019 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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