View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19202_low_5 (Length: 371)

Name: NF19202_low_5
Description: NF19202
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19202_low_5
NF19202_low_5
[»] chr4 (19 HSPs)
chr4 (95-229)||(12007488-12007623)
chr4 (125-256)||(26439914-26440041)
chr4 (1-51)||(54036540-54036590)
chr4 (82-248)||(5474759-5474930)
chr4 (1-59)||(28657451-28657509)
chr4 (1-62)||(11997673-11997734)
chr4 (1-54)||(31657654-31657707)
chr4 (96-177)||(50071998-50072079)
chr4 (3-50)||(32365680-32365727)
chr4 (1-52)||(32621636-32621687)
chr4 (17-51)||(21025600-21025634)
chr4 (1-47)||(23690245-23690291)
chr4 (17-51)||(24509426-24509460)
chr4 (1-51)||(37022271-37022321)
chr4 (1-51)||(43769722-43769772)
chr4 (1-50)||(17683359-17683408)
chr4 (1-50)||(39241312-39241361)
chr4 (1-49)||(5386385-5386433)
chr4 (1-49)||(28676163-28676211)
[»] chr3 (14 HSPs)
chr3 (1-52)||(23770753-23770804)
chr3 (1-50)||(37780324-37780373)
chr3 (1-53)||(47683798-47683850)
chr3 (1-51)||(28700471-28700521)
chr3 (1-51)||(37035536-37035586)
chr3 (1-51)||(43169764-43169814)
chr3 (1-50)||(28884491-28884540)
chr3 (17-52)||(48152324-48152359)
chr3 (16-50)||(536313-536347)
chr3 (1-51)||(49761318-49761368)
chr3 (1-50)||(9753230-9753279)
chr3 (1-50)||(26548785-26548834)
chr3 (1-50)||(30580133-30580182)
chr3 (14-50)||(31446190-31446226)
[»] scaffold0006 (1 HSPs)
scaffold0006 (3-52)||(73068-73117)
[»] chr1 (22 HSPs)
chr1 (1-50)||(50239175-50239224)
chr1 (1-51)||(1690445-1690495)
chr1 (1-51)||(27687530-27687580)
chr1 (1-51)||(40596065-40596115)
chr1 (16-53)||(11037180-11037217)
chr1 (1-50)||(41507205-41507254)
chr1 (81-176)||(27702578-27702673)
chr1 (1-51)||(8200086-8200136)
chr1 (1-51)||(33358169-33358219)
chr1 (2-56)||(47386817-47386871)
chr1 (1-51)||(48220154-48220204)
chr1 (1-55)||(49241515-49241569)
chr1 (1-51)||(49453490-49453540)
chr1 (1-51)||(50797790-50797840)
chr1 (1-50)||(16836126-16836175)
chr1 (14-51)||(33070601-33070638)
chr1 (1-50)||(40139126-40139175)
chr1 (2-51)||(43612092-43612141)
chr1 (16-53)||(49660176-49660213)
chr1 (13-53)||(30530608-30530648)
chr1 (17-53)||(43560201-43560237)
chr1 (1-49)||(45065912-45065960)
[»] scaffold0301 (1 HSPs)
scaffold0301 (147-248)||(7884-7986)
[»] chr8 (11 HSPs)
chr8 (95-175)||(13231823-13231903)
chr8 (1-47)||(26000552-26000598)
chr8 (5-54)||(1739804-1739853)
chr8 (82-159)||(2623239-2623316)
chr8 (1-51)||(30439516-30439566)
chr8 (1-51)||(37392139-37392189)
chr8 (3-52)||(5502369-5502418)
chr8 (1-50)||(34873848-34873897)
chr8 (17-50)||(45407021-45407054)
chr8 (13-53)||(8143243-8143283)
chr8 (1-49)||(39211054-39211102)
[»] chr7 (15 HSPs)
chr7 (5-49)||(22816951-22816995)
chr7 (1-51)||(37856176-37856226)
chr7 (15-51)||(17945067-17945103)
chr7 (16-51)||(35600670-35600705)
chr7 (16-51)||(36703909-36703944)
chr7 (1-51)||(2469702-2469752)
chr7 (1-51)||(22330642-22330692)
chr7 (1-51)||(37352001-37352051)
chr7 (17-51)||(45815294-45815328)
chr7 (3-56)||(45420073-45420126)
chr7 (1-49)||(7817650-7817698)
chr7 (7-51)||(32748443-32748487)
chr7 (16-44)||(33776365-33776393)
chr7 (14-50)||(38656535-38656571)
chr7 (1-49)||(46725618-46725666)
[»] chr6 (7 HSPs)
chr6 (1-51)||(32149499-32149549)
chr6 (89-177)||(30921572-30921660)
chr6 (1-51)||(28748123-28748173)
chr6 (85-150)||(19109596-19109661)
chr6 (13-50)||(29376749-29376786)
chr6 (14-50)||(10335550-10335586)
chr6 (3-51)||(16328714-16328762)
[»] chr2 (11 HSPs)
chr2 (95-177)||(35064389-35064471)
chr2 (1-50)||(25801824-25801873)
chr2 (3-51)||(17117299-17117347)
chr2 (1-49)||(32975070-32975118)
chr2 (1-53)||(37966364-37966416)
chr2 (3-50)||(3104496-3104543)
chr2 (1-56)||(29795441-29795496)
chr2 (1-51)||(3012856-3012906)
chr2 (1-51)||(6646834-6646884)
chr2 (17-50)||(10833684-10833717)
chr2 (6-59)||(39233729-39233781)
[»] chr5 (9 HSPs)
chr5 (1-53)||(6865798-6865850)
chr5 (1-51)||(372731-372781)
chr5 (1-51)||(14206399-14206449)
chr5 (1-59)||(39458659-39458717)
chr5 (1-50)||(6420672-6420720)
chr5 (17-50)||(9742418-9742451)
chr5 (96-177)||(17115735-17115816)
chr5 (82-194)||(24153925-24154038)
chr5 (3-47)||(4098626-4098670)
[»] scaffold0100 (1 HSPs)
scaffold0100 (1-51)||(44785-44835)
[»] scaffold0054 (1 HSPs)
scaffold0054 (1-51)||(31611-31661)


Alignment Details
Target: chr4 (Bit Score: 64; Significance: 7e-28; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 95 - 229
Target Start/End: Original strand, 12007488 - 12007623
Alignment:
Q  95 aaaatgacactaacatcccctccggttttgaaacttacaataacgtcccttgagttctcatcaaacacacaaacacctcccttttt-attaagaccatta 193  Q
    ||||||||||| ||| ||||||  ||||| |||| |||| |||| || ||| ||||||||||||| |||||||||||||||||||| ||||| |||||||    
T  12007488 aaaatgacactgacaccccctctagttttaaaacatacattaacctcacttaagttctcatcaaatacacaaacacctccctttttcattaacaccatta 12007587  T
Q  194 gctttccgttaactttattttttgagggaagtttcc 229  Q
     ||||| |||||||| |||||||||||||| |||||    
T  12007588 actttctgttaacttcattttttgagggaattttcc 12007623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 125 - 256
Target Start/End: Original strand, 26439914 - 26440041
Alignment:
Q  125 aaacttacaataacgtcccttgagttctcatcaaacacacaaacacctccctttttattaagaccattagctttccgttaactttattttttgagggaag 224  Q
    |||||||||||||  |||||| | ||||||||||| |||||||||||||    ||| |||| ||  ||| ||||| ||||||||||||| |||||||||     
T  26439914 aaacttacaataatctcccttaaattctcatcaaatacacaaacacctc----ttttttaacactgttaactttctgttaactttatttcttgagggaat 26440009  T
Q  225 tttccggcaaaaacaaacctccattgtcgaat 256  Q
    |||||||||||| ||| ||| |||||| ||||    
T  26440010 tttccggcaaaagcaatccttcattgttgaat 26440041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 54036540 - 54036590
Alignment:
Q  1 agtatgagagataaagttgtcacaaaatggttgtcaaaatattatttctct 51  Q
    ||||||||||||||||||||||||||||||||||  |||||| ||||||||    
T  54036540 agtatgagagataaagttgtcacaaaatggttgtacaaatatcatttctct 54036590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 82 - 248
Target Start/End: Complemental strand, 5474930 - 5474759
Alignment:
Q  82 cctaaggtctatcaaaatgacactaacatcccctccggttttgaaacttacaataacgtcccttgagttctcatcaa-----acacacaaacacctccct 176  Q
    |||||||| | ||||||||||||||||| ||||||   |||| |||||||||  ||| |||||| |||| || || |     | ||||||||||||  ||    
T  5474930 cctaaggtatgtcaaaatgacactaacaacccctcttattttaaaacttacaccaacctcccttaagttatcttctactctaatacacaaacacctttct 5474831  T
Q  177 tttt-attaagaccattagctttccgttaactttattttttgagggaagtttccggcaaaaacaaacctccat 248  Q
    |||| ||||| ||| ||| |||||||| || | ||||||||||||||| |||| |||||||||||| ||||||    
T  5474830 tttttattaacaccgttaactttccgt-aattatattttttgagggaactttctggcaaaaacaaatctccat 5474759  T

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Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 28657451 - 28657509
Alignment:
Q  1 agtatgagagataaagttgtcacaaaatggttgtcaaaatattatttctctaataataa 59  Q
    ||||||||||| |||||||||||||||||| |||  |||||| |||||||| |||||||    
T  28657451 agtatgagagagaaagttgtcacaaaatggatgttcaaatatcatttctcttataataa 28657509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 11997734 - 11997673
Alignment:
Q  1 agtatgagagataaagttgtcacaaaatggttgtcaaaatattatttctctaataataaggg 62  Q
    ||||||| | |||||||||||||||| |||||||  |||||| ||||||| |||||||||||    
T  11997734 agtatgaaaaataaagttgtcacaaagtggttgtacaaatatcatttctcaaataataaggg 11997673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 31657707 - 31657654
Alignment:
Q  1 agtatgagagataaagttgtcacaaaatggttgtcaaaatattatttctctaat 54  Q
    ||||||||||| |||||||||||||||||| |||  |||||| |||||||||||    
T  31657707 agtatgagagagaaagttgtcacaaaatggatgttcaaatatcatttctctaat 31657654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 96 - 177
Target Start/End: Complemental strand, 50072079 - 50071998
Alignment:
Q  96 aaatgacactaacatcccctccggttttgaaacttacaataacgtcccttgagttctcatcaaacacacaaacacctccctt 177  Q
    |||||||||||||| |||||   ||||| |||||||||  ||| |||||| ||||||||||||| | ||||||| |||||||    
T  50072079 aaatgacactaacaccccctttagttttaaaacttacacaaacctcccttaagttctcatcaaatatacaaacatctccctt 50071998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 3 - 50
Target Start/End: Original strand, 32365680 - 32365727
Alignment:
Q  3 tatgagagataaagttgtcacaaaatggttgtcaaaatattatttctc 50  Q
    ||||||||| ||||||||||||||||||||||  |||||| |||||||    
T  32365680 tatgagagagaaagttgtcacaaaatggttgtacaaatatcatttctc 32365727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 32621687 - 32621636
Alignment:
Q  1 agtatgagagataaagttgtcacaaaatggttgtcaaaatattatttctcta 52  Q
    ||||| ||||| ||||||||||||||||||||||  |||||| |||||||||    
T  32621687 agtattagagagaaagttgtcacaaaatggttgtgcaaatatcatttctcta 32621636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 17 - 51
Target Start/End: Complemental strand, 21025634 - 21025600
Alignment:
Q  17 ttgtcacaaaatggttgtcaaaatattatttctct 51  Q
    |||||||||||||||||||||||||| ||||||||    
T  21025634 ttgtcacaaaatggttgtcaaaatatcatttctct 21025600  T

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Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 23690291 - 23690245
Alignment:
Q  1 agtatgagagataaagttgtcacaaaatggttgtcaaaatattattt 47  Q
    |||||| ||||||||||||||||||||| |||||  |||||||||||    
T  23690291 agtatgtgagataaagttgtcacaaaatagttgtacaaatattattt 23690245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 17 - 51
Target Start/End: Original strand, 24509426 - 24509460
Alignment:
Q  17 ttgtcacaaaatggttgtcaaaatattatttctct 51  Q
    |||||||||||||||||||||||||| ||||||||    
T  24509426 ttgtcacaaaatggttgtcaaaatatcatttctct 24509460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 37022321 - 37022271
Alignment:
Q  1 agtatgagagataaagttgtcacaaaatggttgtcaaaatattatttctct 51  Q
    ||||||||||||||||||||  ||||||||||||  |||||| ||||||||    
T  37022321 agtatgagagataaagttgtatcaaaatggttgtacaaatatcatttctct 37022271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 43769772 - 43769722
Alignment:
Q  1 agtatgagagataaagttgtcacaaaatggttgtcaaaatattatttctct 51  Q
    ||||||||||| |||||||||||||||||| |||  |||||| ||||||||    
T  43769772 agtatgagagagaaagttgtcacaaaatggatgttcaaatatcatttctct 43769722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 17683408 - 17683359
Alignment:
Q  1 agtatgagagataaagttgtcacaaaatggttgtcaaaatattatttctc 50  Q
    |||||||||||||||||||||| ||||||| |||  |||||| |||||||    
T  17683408 agtatgagagataaagttgtcataaaatggatgttcaaatatcatttctc 17683359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 39241312 - 39241361
Alignment:
Q  1 agtatgagagataaagttgtcacaaaatggttgtcaaaatattatttctc 50  Q
    ||||||||||| |||||||||||||| |||||||  |||||| |||||||    
T  39241312 agtatgagagagaaagttgtcacaaattggttgtacaaatatcatttctc 39241361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 5386433 - 5386385
Alignment:
Q  1 agtatgagagataaagttgtcacaaaatggttgtcaaaatattatttct 49  Q
    ||||||||||| |||||||||| |||||||||||  |||||| ||||||    
T  5386433 agtatgagagagaaagttgtcaaaaaatggttgttcaaatatcatttct 5386385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 28676163 - 28676211
Alignment:
Q  1 agtatgagagataaagttgtcacaaaatggttgtcaaaatattatttct 49  Q
    ||||||| ||| ||||||||||||||||||||||  |||||| ||||||    
T  28676163 agtatgaaagagaaagttgtcacaaaatggttgtacaaatatcatttct 28676211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 44; Significance: 6e-16; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 23770753 - 23770804
Alignment:
Q  1 agtatgagagataaagttgtcacaaaatggttgtcaaaatattatttctcta 52  Q
    ||||||||||||||| |||||||||||||||||||||||||| |||||||||    
T  23770753 agtatgagagataaaattgtcacaaaatggttgtcaaaatatcatttctcta 23770804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 37780373 - 37780324
Alignment:
Q  1 agtatgagagataaagttgtcacaaaatggttgtcaaaatattatttctc 50  Q
    ||||||||||| |||||||||||||||| ||||| |||||||||||||||    
T  37780373 agtatgagagagaaagttgtcacaaaattgttgttaaaatattatttctc 37780324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 47683850 - 47683798
Alignment:
Q  1 agtatgagagataaagttgtcacaaaatggttgtcaaaatattatttctctaa 53  Q
    ||||||||||| ||||||||||||||||||||||  |||||| ||||||||||    
T  47683850 agtatgagagagaaagttgtcacaaaatggttgtacaaatatcatttctctaa 47683798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 28700521 - 28700471
Alignment:
Q  1 agtatgagagataaagttgtcacaaaatggttgtcaaaatattatttctct 51  Q
    |||||||||||||||||||||| |||||||||||  |||||| ||||||||    
T  28700521 agtatgagagataaagttgtcaaaaaatggttgttcaaatatcatttctct 28700471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 37035536 - 37035586
Alignment:
Q  1 agtatgagagataaagttgtcacaaaatggttgtcaaaatattatttctct 51  Q
    ||||||| | ||||| |||||||||||||||||||||||||| ||||||||    
T  37035536 agtatgaaaaataaaattgtcacaaaatggttgtcaaaatatcatttctct 37035586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 43169764 - 43169814
Alignment:
Q  1 agtatgagagataaagttgtcacaaaatggttgtcaaaatattatttctct 51  Q
    ||||||||||| ||||||||||||||||||||||  |||||| ||||||||    
T  43169764 agtatgagagaaaaagttgtcacaaaatggttgtacaaatatcatttctct 43169814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 28884540 - 28884491
Alignment:
Q  1 agtatgagagataaagttgtcacaaaatggttgtcaaaatattatttctc 50  Q
    ||||||||||| |||||||||||| |||||||||  ||||||||||||||    
T  28884540 agtatgagagagaaagttgtcacataatggttgtacaaatattatttctc 28884491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 17 - 52
Target Start/End: Original strand, 48152324 - 48152359
Alignment:
Q  17 ttgtcacaaaatggttgtcaaaatattatttctcta 52  Q
    |||||||||||||||||||||||||| |||||||||    
T  48152324 ttgtcacaaaatggttgtcaaaatatcatttctcta 48152359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 50
Target Start/End: Original strand, 536313 - 536347
Alignment:
Q  16 gttgtcacaaaatggttgtcaaaatattatttctc 50  Q
    ||||||||||||||||||||||||||| |||||||    
T  536313 gttgtcacaaaatggttgtcaaaatatcatttctc 536347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 49761368 - 49761318
Alignment:
Q  1 agtatgagagataaagttgtcacaaaatggttgtcaaaatattatttctct 51  Q
    ||||||||||| |||||||||||||||||| |||  |||||| ||||||||    
T  49761368 agtatgagagagaaagttgtcacaaaatggatgttcaaatatcatttctct 49761318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 9753279 - 9753230
Alignment:
Q  1 agtatgagagataaagttgtcacaaaatggttgtcaaaatattatttctc 50  Q
    ||||||||||||||| ||||||||||||| ||||  |||||| |||||||    
T  9753279 agtatgagagataaaattgtcacaaaatgattgttcaaatatcatttctc 9753230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 26548785 - 26548834
Alignment:
Q  1 agtatgagagataaagttgtcacaaaatggttgtcaaaatattatttctc 50  Q
    ||||||||||| ||||||||  |||||| |||||| ||||||||||||||    
T  26548785 agtatgagagagaaagttgtaccaaaatagttgtccaaatattatttctc 26548834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 30580182 - 30580133
Alignment:
Q  1 agtatgagagataaagttgtcacaaaatggttgtcaaaatattatttctc 50  Q
    ||||||| |||||||||||||| |||||||||||  |||||| |||||||    
T  30580182 agtatgaaagataaagttgtcataaaatggttgtataaatatcatttctc 30580133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 14 - 50
Target Start/End: Original strand, 31446190 - 31446226
Alignment:
Q  14 aagttgtcacaaaatggttgtcaaaatattatttctc 50  Q
    |||||||||||||||||||||  ||||||||||||||    
T  31446190 aagttgtcacaaaatggttgttcaaatattatttctc 31446226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 3 - 52
Target Start/End: Original strand, 73068 - 73117
Alignment:
Q  3 tatgagagataaagttgtcacaaaatggttgtcaaaatattatttctcta 52  Q
    |||||||||||||||||||||||||| ||||||||||||| |||||||||    
T  73068 tatgagagataaagttgtcacaaaatagttgtcaaaatatcatttctcta 73117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 22)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 50239175 - 50239224
Alignment:
Q  1 agtatgagagataaagttgtcacaaaatggttgtcaaaatattatttctc 50  Q
    ||||||||||||||| |||||||||||||||||||||||||| |||||||    
T  50239175 agtatgagagataaaattgtcacaaaatggttgtcaaaatatcatttctc 50239224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 1690495 - 1690445
Alignment:
Q  1 agtatgagagataaagttgtcacaaaatggttgtcaaaatattatttctct 51  Q
    ||||||||||| ||||||||||||||||||||||  |||||||||||||||    
T  1690495 agtatgagagaaaaagttgtcacaaaatggttgtacaaatattatttctct 1690445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 27687530 - 27687580
Alignment:
Q  1 agtatgagagataaagttgtcacaaaatggttgtcaaaatattatttctct 51  Q
    ||||||||||||||||||||||||||||||||||  |||||| ||||||||    
T  27687530 agtatgagagataaagttgtcacaaaatggttgtacaaatatcatttctct 27687580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 40596065 - 40596115
Alignment:
Q  1 agtatgagagataaagttgtcacaaaatggttgtcaaaatattatttctct 51  Q
    ||||||||||| ||||||||||||||||||||||  |||||| ||||||||    
T  40596065 agtatgagagagaaagttgtcacaaaatggttgtacaaatatcatttctct 40596115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 16 - 53
Target Start/End: Complemental strand, 11037217 - 11037180
Alignment:
Q  16 gttgtcacaaaatggttgtcaaaatattatttctctaa 53  Q
    ||||||||||||||||||||||||||| ||||||||||    
T  11037217 gttgtcacaaaatggttgtcaaaatatcatttctctaa 11037180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 41507205 - 41507254
Alignment:
Q  1 agtatgagagataaagttgtcacaaaatggttgtcaaaatattatttctc 50  Q
    ||||||||||| ||||||||||||||||||||||  |||||| |||||||    
T  41507205 agtatgagagagaaagttgtcacaaaatggttgtacaaatatcatttctc 41507254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 81 - 176
Target Start/End: Original strand, 27702578 - 27702673
Alignment:
Q  81 tcctaaggtctatcaaaatgacactaacatcccctccggttttgaaacttacaataacgtcccttgagttctcatcaaacacacaaacacctccct 176  Q
    ||||||||| ||| ||||||||||| |||||| ||    |||| ||| ||||| |||| ||||||||||| | |||||| | ||||||||||||||    
T  27702578 tcctaaggtttattaaaatgacactgacatccactataattttaaaatttacactaacttcccttgagtttttatcaaatagacaaacacctccct 27702673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 8200136 - 8200086
Alignment:
Q  1 agtatgagagataaagttgtcacaaaatggttgtcaaaatattatttctct 51  Q
    ||||||||||| |||||||||||||||||| |||  |||||| ||||||||    
T  8200136 agtatgagagagaaagttgtcacaaaatggatgttcaaatatcatttctct 8200086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 33358169 - 33358219
Alignment:
Q  1 agtatgagagataaagttgtcacaaaatggttgtcaaaatattatttctct 51  Q
    ||||||||||| |||||||||||||||||| |||  |||||| ||||||||    
T  33358169 agtatgagagagaaagttgtcacaaaatggatgttcaaatatcatttctct 33358219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 2 - 56
Target Start/End: Original strand, 47386817 - 47386871
Alignment:
Q  2 gtatgagagataaagttgtcacaaaatggttgtcaaaatattatttctctaataa 56  Q
    |||| |||||||||||||| | |||||||||||  |||||| |||||||||||||    
T  47386817 gtataagagataaagttgttataaaatggttgtacaaatatcatttctctaataa 47386871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 48220154 - 48220204
Alignment:
Q  1 agtatgagagataaagttgtcacaaaatggttgtcaaaatattatttctct 51  Q
    ||||||||||| |||||||||||||||||| |||  |||||| ||||||||    
T  48220154 agtatgagagagaaagttgtcacaaaatggatgttcaaatatcatttctct 48220204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 49241515 - 49241569
Alignment:
Q  1 agtatgagagataaagttgtcacaaaatggttgtcaaaatattatttctctaata 55  Q
    ||||||||||| |||||||||||||| ||| |||  |||||| ||||||||||||    
T  49241515 agtatgagagagaaagttgtcacaaagtggatgttcaaatatcatttctctaata 49241569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 49453540 - 49453490
Alignment:
Q  1 agtatgagagataaagttgtcacaaaatggttgtcaaaatattatttctct 51  Q
    ||||||||||| |||||||||||||| |||||||  |||||| ||||||||    
T  49453540 agtatgagagagaaagttgtcacaaagtggttgtacaaatatcatttctct 49453490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 50797840 - 50797790
Alignment:
Q  1 agtatgagagataaagttgtcacaaaatggttgtcaaaatattatttctct 51  Q
    ||||||||||| ||||||||||||||||| ||||  |||||| ||||||||    
T  50797840 agtatgagagagaaagttgtcacaaaatgattgtacaaatatcatttctct 50797790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 16836126 - 16836175
Alignment:
Q  1 agtatgagagataaagttgtcacaaaatggttgtcaaaatattatttctc 50  Q
    ||||||||||| ||||||||||||||||| ||||  |||||| |||||||    
T  16836126 agtatgagagaaaaagttgtcacaaaatgattgtacaaatatcatttctc 16836175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 51
Target Start/End: Complemental strand, 33070638 - 33070601
Alignment:
Q  14 aagttgtcacaaaatggttgtcaaaatattatttctct 51  Q
    ||||||||| ||||||||||||||||||| ||||||||    
T  33070638 aagttgtcataaaatggttgtcaaaatatcatttctct 33070601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 40139175 - 40139126
Alignment:
Q  1 agtatgagagataaagttgtcacaaaatggttgtcaaaatattatttctc 50  Q
    ||||||||||| |||||||||| |||||||||||  |||||| |||||||    
T  40139175 agtatgagagagaaagttgtcataaaatggttgtacaaatatcatttctc 40139126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 2 - 51
Target Start/End: Original strand, 43612092 - 43612141
Alignment:
Q  2 gtatgagagataaagttgtcacaaaatggttgtcaaaatattatttctct 51  Q
    |||||||||| |||||||||| |||||||||||  |||||| ||||||||    
T  43612092 gtatgagagagaaagttgtcataaaatggttgtacaaatatcatttctct 43612141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 53
Target Start/End: Complemental strand, 49660213 - 49660176
Alignment:
Q  16 gttgtcacaaaatggttgtcaaaatattatttctctaa 53  Q
    ||||||||||||||||||| ||||||| ||||||||||    
T  49660213 gttgtcacaaaatggttgttaaaatatcatttctctaa 49660176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 13 - 53
Target Start/End: Original strand, 30530608 - 30530648
Alignment:
Q  13 aaagttgtcacaaaatggttgtcaaaatattatttctctaa 53  Q
    ||||||||||||||||||||||  |||||| ||||||||||    
T  30530608 aaagttgtcacaaaatggttgtataaatatcatttctctaa 30530648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 53
Target Start/End: Complemental strand, 43560237 - 43560201
Alignment:
Q  17 ttgtcacaaaatggttgtcaaaatattatttctctaa 53  Q
    |||||||||||||||||| ||||||| ||||||||||    
T  43560237 ttgtcacaaaatggttgtgaaaatatcatttctctaa 43560201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 45065912 - 45065960
Alignment:
Q  1 agtatgagagataaagttgtcacaaaatggttgtcaaaatattatttct 49  Q
    ||||||||||| |||||||||||||||||| |||  |||||| ||||||    
T  45065912 agtatgagagagaaagttgtcacaaaatggatgttcaaatatcatttct 45065960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0301 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold0301
Description:

Target: scaffold0301; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 147 - 248
Target Start/End: Original strand, 7884 - 7986
Alignment:
Q  147 agttctcatcaaacacacaaacacctccctttt-tattaagaccattagctttccgttaactttattttttgagggaagtttccggcaaaaacaaacctc 245  Q
    ||||||||||||| |||||||||||| |||||| |||||| ||||||| |||||  |||| | |||||||| || ||| ||| |  ||||||||||||||    
T  7884 agttctcatcaaatacacaaacaccttccttttctattaacaccattaactttcatttaaatgtatttttttagcgaatttttcaacaaaaacaaacctc 7983  T
Q  246 cat 248  Q
    |||    
T  7984 cat 7986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.000000000009; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 95 - 175
Target Start/End: Complemental strand, 13231903 - 13231823
Alignment:
Q  95 aaaatgacactaacatcccctccggttttgaaacttacaataacgtcccttgagttctcatcaaacacacaaacacctccc 175  Q
    ||||||||||| ||| ||||||   |||| ||||||||| |||| |||||| |||||||||||||  ||||||||||||||    
T  13231903 aaaatgacactgacaccccctctaattttaaaacttacactaacctccctttagttctcatcaaatgcacaaacacctccc 13231823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 26000598 - 26000552
Alignment:
Q  1 agtatgagagataaagttgtcacaaaatggttgtcaaaatattattt 47  Q
    |||||||||||||||||||||| ||||||||||| ||||||| ||||    
T  26000598 agtatgagagataaagttgtcataaaatggttgtaaaaatatcattt 26000552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 5 - 54
Target Start/End: Complemental strand, 1739853 - 1739804
Alignment:
Q  5 tgagagataaagttgtcacaaaatggttgtcaaaatattatttctctaat 54  Q
    |||||||||||||||||| |||||||||||  |||||| |||||||||||    
T  1739853 tgagagataaagttgtcaaaaaatggttgtgtaaatatcatttctctaat 1739804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 82 - 159
Target Start/End: Complemental strand, 2623316 - 2623239
Alignment:
Q  82 cctaaggtctatcaaaatgacactaacatcccctccggttttgaaacttacaataacgtcccttgagttctcatcaaa 159  Q
    |||||||| ||| ||||||||||| ||||||| ||   |||| ||||||||| |||| ||||||||||| ||||||||    
T  2623316 cctaaggtttattaaaatgacactgacatcccatctaattttaaaacttacactaacctcccttgagttttcatcaaa 2623239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 30439516 - 30439566
Alignment:
Q  1 agtatgagagataaagttgtcacaaaatggttgtcaaaatattatttctct 51  Q
    ||||||||||| |||||||||||||||||| |||  |||||| ||||||||    
T  30439516 agtatgagagagaaagttgtcacaaaatggatgttcaaatatcatttctct 30439566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 37392139 - 37392189
Alignment:
Q  1 agtatgagagataaagttgtcacaaaatggttgtcaaaatattatttctct 51  Q
    ||||||||||| |||||||||| |||||||||||  |||||| ||||||||    
T  37392139 agtatgagagagaaagttgtcaaaaaatggttgtacaaatatcatttctct 37392189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 52
Target Start/End: Complemental strand, 5502418 - 5502369
Alignment:
Q  3 tatgagagataaagttgtcacaaaatggttgtcaaaatattatttctcta 52  Q
    ||||||||| |||||||||||||| |||||||  |||||| |||||||||    
T  5502418 tatgagagagaaagttgtcacaaagtggttgtacaaatatcatttctcta 5502369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 34873897 - 34873848
Alignment:
Q  1 agtatgagagataaagttgtcacaaaatggttgtcaaaatattatttctc 50  Q
    ||||||||| ||||||||||||||||||  |||| ||||||| |||||||    
T  34873897 agtatgagaaataaagttgtcacaaaataattgttaaaatatcatttctc 34873848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 50
Target Start/End: Complemental strand, 45407054 - 45407021
Alignment:
Q  17 ttgtcacaaaatggttgtcaaaatattatttctc 50  Q
    ||||||||| ||||||||||||||||||||||||    
T  45407054 ttgtcacaacatggttgtcaaaatattatttctc 45407021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 13 - 53
Target Start/End: Original strand, 8143243 - 8143283
Alignment:
Q  13 aaagttgtcacaaaatggttgtcaaaatattatttctctaa 53  Q
    |||||||||||||||| |||||  |||||||||||||||||    
T  8143243 aaagttgtcacaaaatagttgtacaaatattatttctctaa 8143283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 39211102 - 39211054
Alignment:
Q  1 agtatgagagataaagttgtcacaaaatggttgtcaaaatattatttct 49  Q
    ||||||||||| |||||||||| |||||||||||  |||||| ||||||    
T  39211102 agtatgagagagaaagttgtcaaaaaatggttgttcaaatatcatttct 39211054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.000000000009; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 5 - 49
Target Start/End: Complemental strand, 22816995 - 22816951
Alignment:
Q  5 tgagagataaagttgtcacaaaatggttgtcaaaatattatttct 49  Q
    ||||| |||||||||||||||||||||||||||||||| ||||||    
T  22816995 tgagaaataaagttgtcacaaaatggttgtcaaaatatcatttct 22816951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 37856176 - 37856226
Alignment:
Q  1 agtatgagagataaagttgtcacaaaatggttgtcaaaatattatttctct 51  Q
    |||||| |||||||||||||||||||||||||||  |||||| ||||||||    
T  37856176 agtatgtgagataaagttgtcacaaaatggttgtacaaatatcatttctct 37856226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 15 - 51
Target Start/End: Complemental strand, 17945103 - 17945067
Alignment:
Q  15 agttgtcacaaaatggttgtcaaaatattatttctct 51  Q
    |||||||||||||||||||||||||||| ||||||||    
T  17945103 agttgtcacaaaatggttgtcaaaatatcatttctct 17945067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 16 - 51
Target Start/End: Complemental strand, 35600705 - 35600670
Alignment:
Q  16 gttgtcacaaaatggttgtcaaaatattatttctct 51  Q
    ||||||||||||||||||||||||||| ||||||||    
T  35600705 gttgtcacaaaatggttgtcaaaatatcatttctct 35600670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 16 - 51
Target Start/End: Original strand, 36703909 - 36703944
Alignment:
Q  16 gttgtcacaaaatggttgtcaaaatattatttctct 51  Q
    ||||||||||||||||||||||||||| ||||||||    
T  36703909 gttgtcacaaaatggttgtcaaaatatcatttctct 36703944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 2469752 - 2469702
Alignment:
Q  1 agtatgagagataaagttgtcacaaaatggttgtcaaaatattatttctct 51  Q
    ||||||||||| |||||||||||||| |||||||  |||||| ||||||||    
T  2469752 agtatgagagagaaagttgtcacaaagtggttgtacaaatatcatttctct 2469702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 22330642 - 22330692
Alignment:
Q  1 agtatgagagataaagttgtcacaaaatggttgtcaaaatattatttctct 51  Q
    ||||||||||| |||||||||||||| |||||||  |||||| ||||||||    
T  22330642 agtatgagagagaaagttgtcacaaagtggttgtacaaatatcatttctct 22330692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 37352001 - 37352051
Alignment:
Q  1 agtatgagagataaagttgtcacaaaatggttgtcaaaatattatttctct 51  Q
    ||||||||||| |||||||||||||| |||||||  |||||| ||||||||    
T  37352001 agtatgagagagaaagttgtcacaaagtggttgtacaaatatcatttctct 37352051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 17 - 51
Target Start/End: Original strand, 45815294 - 45815328
Alignment:
Q  17 ttgtcacaaaatggttgtcaaaatattatttctct 51  Q
    |||||||||||||||||||||||||| ||||||||    
T  45815294 ttgtcacaaaatggttgtcaaaatatcatttctct 45815328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 56
Target Start/End: Original strand, 45420073 - 45420126
Alignment:
Q  3 tatgagagataaagttgtcacaaaatggttgtcaaaatattatttctctaataa 56  Q
    ||||||||| |||||||||| ||||| |||||  |||||| |||||||||||||    
T  45420073 tatgagagagaaagttgtcaaaaaatagttgttcaaatatcatttctctaataa 45420126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 7817698 - 7817650
Alignment:
Q  1 agtatgagagataaagttgtcacaaaatggttgtcaaaatattatttct 49  Q
    ||||||||||| |||||||||||||||||| |||  |||||| ||||||    
T  7817698 agtatgagagagaaagttgtcacaaaatggatgttcaaatatcatttct 7817650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 7 - 51
Target Start/End: Original strand, 32748443 - 32748487
Alignment:
Q  7 agagataaagttgtcacaaaatggttgtcaaaatattatttctct 51  Q
    |||||||||||||||| ||||||||||| ||||||  ||||||||    
T  32748443 agagataaagttgtcataaaatggttgttaaaataccatttctct 32748487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 16 - 44
Target Start/End: Complemental strand, 33776393 - 33776365
Alignment:
Q  16 gttgtcacaaaatggttgtcaaaatatta 44  Q
    |||||||||||||||||||||||||||||    
T  33776393 gttgtcacaaaatggttgtcaaaatatta 33776365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 14 - 50
Target Start/End: Complemental strand, 38656571 - 38656535
Alignment:
Q  14 aagttgtcacaaaatggttgtcaaaatattatttctc 50  Q
    ||||| ||||||||||||||||||||||| |||||||    
T  38656571 aagttctcacaaaatggttgtcaaaatatcatttctc 38656535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 46725666 - 46725618
Alignment:
Q  1 agtatgagagataaagttgtcacaaaatggttgtcaaaatattatttct 49  Q
    ||||||||||| |||||||||||||||| |||||  |||||| ||||||    
T  46725666 agtatgagagaaaaagttgtcacaaaatagttgtataaatatcatttct 46725618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 32149549 - 32149499
Alignment:
Q  1 agtatgagagataaagttgtcacaaaatggttgtcaaaatattatttctct 51  Q
    ||||||||||| |||||||||||||| |||||||  |||||||||||||||    
T  32149549 agtatgagagagaaagttgtcacaaagtggttgtacaaatattatttctct 32149499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 89 - 177
Target Start/End: Complemental strand, 30921660 - 30921572
Alignment:
Q  89 tctatcaaaatgacactaacatcccctccggttttgaaacttacaataacgtcccttgagttctcatcaaacacacaaacacctccctt 177  Q
    ||||| ||||||||||||| ||||||||  ||||| |||| ||||||||  |||||| |||||| |||| | | || ||||||||||||    
T  30921660 tctattaaaatgacactaaaatcccctctagttttaaaacatacaataaactcccttaagttctaatcatatagactaacacctccctt 30921572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 28748173 - 28748123
Alignment:
Q  1 agtatgagagataaagttgtcacaaaatggttgtcaaaatattatttctct 51  Q
    ||||||||||| |||||||||||||||||| |||  |||||| ||||||||    
T  28748173 agtatgagagagaaagttgtcacaaaatggatgttcaaatatcatttctct 28748123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 85 - 150
Target Start/End: Complemental strand, 19109661 - 19109596
Alignment:
Q  85 aaggtctatcaaaatgacactaacatcccctccggttttgaaacttacaataacgtcccttgagtt 150  Q
    ||||||||||||||| ||| | ||||||||||   |||| |||||||||||||| |||||| ||||    
T  19109661 aaggtctatcaaaataacattgacatcccctctatttttaaaacttacaataacctcccttaagtt 19109596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 50
Target Start/End: Original strand, 29376749 - 29376786
Alignment:
Q  13 aaagttgtcacaaaatggttgtcaaaatattatttctc 50  Q
    |||||||||||||||||||||| ||||||| |||||||    
T  29376749 aaagttgtcacaaaatggttgtaaaaatatcatttctc 29376786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 14 - 50
Target Start/End: Complemental strand, 10335586 - 10335550
Alignment:
Q  14 aagttgtcacaaaatggttgtcaaaatattatttctc 50  Q
    |||| |||||||||||||||||||||||| |||||||    
T  10335586 aagtcgtcacaaaatggttgtcaaaatatcatttctc 10335550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 3 - 51
Target Start/End: Original strand, 16328714 - 16328762
Alignment:
Q  3 tatgagagataaagttgtcacaaaatggttgtcaaaatattatttctct 51  Q
    |||||||||||||||||| | |||||||||||  |||||| ||||||||    
T  16328714 tatgagagataaagttgttataaaatggttgtacaaatatcatttctct 16328762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 95 - 177
Target Start/End: Complemental strand, 35064471 - 35064389
Alignment:
Q  95 aaaatgacactaacatcccctccggttttgaaacttacaataacgtcccttgagttctcatcaaacacacaaacacctccctt 177  Q
    ||||||||||||||||||||||  ||||| ||||| ||| |||| |||||| | ||||||||||| | | ||| |||||||||    
T  35064471 aaaatgacactaacatcccctctagttttaaaactcacactaacttcccttaaattctcatcaaatagataaatacctccctt 35064389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 25801824 - 25801873
Alignment:
Q  1 agtatgagagataaagttgtcacaaaatggttgtcaaaatattatttctc 50  Q
    |||||||||||||||||||||||||| |||||||  |||||| |||||||    
T  25801824 agtatgagagataaagttgtcacaaattggttgtacaaatatcatttctc 25801873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 3 - 51
Target Start/End: Complemental strand, 17117347 - 17117299
Alignment:
Q  3 tatgagagataaagttgtcacaaaatggttgtcaaaatattatttctct 51  Q
    ||||| |||||||||||||||||||| ||||||||||||| ||| ||||    
T  17117347 tatgatagataaagttgtcacaaaatagttgtcaaaatatcattcctct 17117299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 32975118 - 32975070
Alignment:
Q  1 agtatgagagataaagttgtcacaaaatggttgtcaaaatattatttct 49  Q
    ||||||||||||||| ||||||||||||  |||||||||||| ||||||    
T  32975118 agtatgagagataaaattgtcacaaaataattgtcaaaatatcatttct 32975070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 37966416 - 37966364
Alignment:
Q  1 agtatgagagataaagttgtcacaaaatggttgtcaaaatattatttctctaa 53  Q
    ||||||||||| |||||||||||||| |||||||  |||||| ||||||||||    
T  37966416 agtatgagagaaaaagttgtcacaaattggttgtacaaatatcatttctctaa 37966364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 3 - 50
Target Start/End: Complemental strand, 3104543 - 3104496
Alignment:
Q  3 tatgagagataaagttgtcacaaaatggttgtcaaaatattatttctc 50  Q
    ||||||||||||||||||||||||||  || ||||||||| |||||||    
T  3104543 tatgagagataaagttgtcacaaaataattatcaaaatatcatttctc 3104496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 29795496 - 29795441
Alignment:
Q  1 agtatgagagataaagttgtcacaaaatggttgtcaaaatattatttctctaataa 56  Q
    |||||| |||| ||||||||||||||||||||||  |||||| |||||||| ||||    
T  29795496 agtatgtgagagaaagttgtcacaaaatggttgtacaaatatcatttctcttataa 29795441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 3012856 - 3012906
Alignment:
Q  1 agtatgagagataaagttgtcacaaaatggttgtcaaaatattatttctct 51  Q
    ||||||||||| |||||||||||||||||| |||  |||||| ||||||||    
T  3012856 agtatgagagagaaagttgtcacaaaatggatgttcaaatatcatttctct 3012906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 6646884 - 6646834
Alignment:
Q  1 agtatgagagataaagttgtcacaaaatggttgtcaaaatattatttctct 51  Q
    ||||||||||| |||||||||||||||||| |||  |||||| ||||||||    
T  6646884 agtatgagagagaaagttgtcacaaaatggatgttcaaatatcatttctct 6646834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 50
Target Start/End: Original strand, 10833684 - 10833717
Alignment:
Q  17 ttgtcacaaaatggttgtcaaaatattatttctc 50  Q
    |||||||||||||||||||||||||| |||||||    
T  10833684 ttgtcacaaaatggttgtcaaaatatcatttctc 10833717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 6 - 59
Target Start/End: Original strand, 39233729 - 39233781
Alignment:
Q  6 gagagataaagttgtcacaaaatggttgtcaaaatattatttctctaataataa 59  Q
    ||||||||||||||||| |||||| |||| ||||||| ||||||| ||||||||    
T  39233729 gagagataaagttgtcaaaaaatgattgtaaaaatatcatttctc-aataataa 39233781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 6865798 - 6865850
Alignment:
Q  1 agtatgagagataaagttgtcacaaaatggttgtcaaaatattatttctctaa 53  Q
    ||||||||||| |||||||||||||| |||||||  |||||| ||||||||||    
T  6865798 agtatgagagagaaagttgtcacaaagtggttgtacaaatatcatttctctaa 6865850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 372731 - 372781
Alignment:
Q  1 agtatgagagataaagttgtcacaaaatggttgtcaaaatattatttctct 51  Q
    ||||||||||| ||||||||||||||||||||||  ||| || ||||||||    
T  372731 agtatgagagagaaagttgtcacaaaatggttgtacaaaaatcatttctct 372781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 14206449 - 14206399
Alignment:
Q  1 agtatgagagataaagttgtcacaaaatggttgtcaaaatattatttctct 51  Q
    ||||||||||| |||||||||| |||||||||||  |||||| ||||||||    
T  14206449 agtatgagagagaaagttgtcaaaaaatggttgtacaaatatcatttctct 14206399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 39458717 - 39458659
Alignment:
Q  1 agtatgagagataaagttgtcacaaaatggttgtcaaaatattatttctctaataataa 59  Q
    ||||||||||| |||||||||| ||| |||||||  | |||| ||||||||||||||||    
T  39458717 agtatgagagagaaagttgtcaaaaactggttgtacagatatcatttctctaataataa 39458659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 6420720 - 6420672
Alignment:
Q  1 agtatgagagataaagttgtcacaaaatggttgtcaaaatattatttctc 50  Q
    ||||||||||| ||||||||||||||||||||||  |||||| |||||||    
T  6420720 agtatgagaga-aaagttgtcacaaaatggttgtagaaatatcatttctc 6420672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 50
Target Start/End: Original strand, 9742418 - 9742451
Alignment:
Q  17 ttgtcacaaaatggttgtcaaaatattatttctc 50  Q
    |||||||||||||||||||||||||| |||||||    
T  9742418 ttgtcacaaaatggttgtcaaaatatcatttctc 9742451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 96 - 177
Target Start/End: Original strand, 17115735 - 17115816
Alignment:
Q  96 aaatgacactaacatcccctccggttttgaaacttacaataacgtcccttgagttctcatcaaacacacaaacacctccctt 177  Q
    |||||||||||||| |  |||  ||||| |||||||||  ||| |||||| ||||||||||||| | ||||||| |||||||    
T  17115735 aaatgacactaacaccaactctagttttaaaacttacaccaacctcccttaagttctcatcaaatatacaaacatctccctt 17115816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 82 - 194
Target Start/End: Complemental strand, 24154038 - 24153925
Alignment:
Q  82 cctaaggtctatcaaaatgacactaacatcccctccggttttgaaacttacaataacgtcccttgagttctcatcaaacacacaaacacctccctttt-t 180  Q
    |||||||| ||| ||||||||| | | | ||||||  ||||| ||||| ||| |||| |||||| ||||   |||||| | ||||||||||||||||| |    
T  24154038 cctaaggtttattaaaatgacagttagaccccctctagttttaaaactaacattaacctcccttaagtttctatcaaataaacaaacacctcccttttat 24153939  T
Q  181 attaagaccattag 194  Q
    ||||| ||||||||    
T  24153938 attaacaccattag 24153925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 3 - 47
Target Start/End: Complemental strand, 4098670 - 4098626
Alignment:
Q  3 tatgagagataaagttgtcacaaaatggttgtcaaaatattattt 47  Q
    |||||||||||||||||||||||||| |||||  |||||| ||||    
T  4098670 tatgagagataaagttgtcacaaaatagttgtacaaatatcattt 4098626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0100 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0100
Description:

Target: scaffold0100; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 44835 - 44785
Alignment:
Q  1 agtatgagagataaagttgtcacaaaatggttgtcaaaatattatttctct 51  Q
    ||||||||||| |||||||||||||||||| |||  |||||| ||||||||    
T  44835 agtatgagagagaaagttgtcacaaaatggatgttcaaatatcatttctct 44785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 31611 - 31661
Alignment:
Q  1 agtatgagagataaagttgtcacaaaatggttgtcaaaatattatttctct 51  Q
    ||||||||||| |||||||||| |||||||||||  |||||| ||||||||    
T  31611 agtatgagagagaaagttgtcaaaaaatggttgtacaaatatcatttctct 31661  T

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