View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19203_high_3 (Length: 329)
Name: NF19203_high_3
Description: NF19203
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19203_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 273; Significance: 1e-152; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 1 - 327
Target Start/End: Original strand, 6851079 - 6851404
Alignment:
| Q |
1 |
accaatacttcttaattcaaa-ctaacgaaattcaccacccatatttctcttcacaatttttatgaacaggtctgccagttggttttatgtaggacaata |
99 |
Q |
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| T |
6851079 |
accaatacttcttaatttaaaactaacgaaattcaccacccatatttcgcttcacaatttttatgaacaggtctgccagttggttttacgtaggacaata |
6851178 |
T |
|
| Q |
100 |
ctcagcacttaacttgttcttgttgacgtgatttctaagaaaagagagttagtgattttggaaacaattatgtcaaaataaatgctataacaacatagtg |
199 |
Q |
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| T |
6851179 |
cttagcacttaacttgttcttgttgacgtaatttctaagaaaagag--ttagtgattttggaaacaattatgtcaaaataaatgctataacaacatagtg |
6851276 |
T |
|
| Q |
200 |
tgaatatgattctcacgtggatctcatcctctatgcagccattatcatagtcttgtatttcagattttataatatgaaacgctccggtataaattaggaa |
299 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
6851277 |
tgaatatgattctcacgtggatctcatcctctatgcagctattatcatagtcttgtatttcagattttataatatgaaacgctccggtacaaattaggaa |
6851376 |
T |
|
| Q |
300 |
gagtttatatatacattatctttgcagt |
327 |
Q |
| |
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||||||||||| |||||| ||||||||| |
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| T |
6851377 |
gagtttatatacacattacctttgcagt |
6851404 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 70 - 131
Target Start/End: Complemental strand, 29355606 - 29355545
Alignment:
| Q |
70 |
gtctgccagttggttttatgtaggacaatactcagcacttaacttgttcttgttgacgtgat |
131 |
Q |
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|||||||| ||||| || |||||||||||||||| |||||| | ||||||||||||| |||| |
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| T |
29355606 |
gtctgccaattggtcttgtgtaggacaatactcaacacttagcgtgttcttgttgacttgat |
29355545 |
T |
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