View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19203_high_5 (Length: 319)
Name: NF19203_high_5
Description: NF19203
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19203_high_5 |
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| [»] chr1 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 305; Significance: 1e-172; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 305; E-Value: 1e-172
Query Start/End: Original strand, 11 - 319
Target Start/End: Complemental strand, 32253836 - 32253528
Alignment:
| Q |
11 |
caaaggcccagtttccccggacgtagaggaggacaccaccaacaagaggagggatctgaggaacaaaatgaaggtagcagcgtgctgagtggtttcagct |
110 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32253836 |
caaaggcccagtttccccggacgtagaggaggacgccaccaacaagaggagggatctgaggaacaaaatgaaggtagcagcgtgctgagtggtttcagct |
32253737 |
T |
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| Q |
111 |
cagagtttttagcgcaggctctcaacacggatcaggatacagctaagagactacaatccccacgcgaccagaggagccaaatcgtgagagtagagggcgg |
210 |
Q |
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| T |
32253736 |
cagagtttttagcgcaggctctcaacacggatcaggatacagctaagagactacaatccccacgcgaccagaggagccaaatcgtgagagtagagggcgg |
32253637 |
T |
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| Q |
211 |
tctcagcatcatcagtcctgagtggcagcaagaagatgaagaatatgaaagaagtcccgaggaggaagaagatgaagggagatcaagacaccttcttaga |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32253636 |
tctcagcatcatcagtcctgagtggcagcaagaagatgaagaatatgaaagaagtcccgaggaggaagaagatgaagggagatcaagacaccttcttaga |
32253537 |
T |
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| Q |
311 |
cgagaacat |
319 |
Q |
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||||||||| |
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| T |
32253536 |
cgagaacat |
32253528 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 14 - 311
Target Start/End: Complemental strand, 32249047 - 32248750
Alignment:
| Q |
14 |
aggcccagtttccccggacgtagaggaggacaccaccaacaagaggagggatctgaggaacaaaatgaaggtagcagcgtgctgagtggtttcagctcag |
113 |
Q |
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| T |
32249047 |
aggcccagtttccccggacgtagaggaggacgccaacaacaagaggagggatctgaggaacaaaacgaaggtagcagtgtgctgagtggtttcagctcag |
32248948 |
T |
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| Q |
114 |
agtttttagcgcaggctctcaacacggatcaggatacagctaagagactacaatccccacgcgaccagaggagccaaatcgtgagagtagagggcggtct |
213 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32248947 |
agtttttagcgcaggcactcaacacggatcaggatacagctaagagacttcaatctccacgcgaccagaggagccaaatcgtgagagtagagggcggtct |
32248848 |
T |
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| Q |
214 |
cagcatcatcagtcctgagtggcagcaagaagatgaagaatatgaaagaagtcccgaggaggaagaagatgaagggagatcaagacaccttcttagac |
311 |
Q |
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| T |
32248847 |
cagcatcatcagccctgagtggcagcaagaagatgaagaatacgaaagaagtcacgaggaggaagaagatgaacggagaccaagacacattcgtagac |
32248750 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 14 - 311
Target Start/End: Complemental strand, 32243309 - 32243012
Alignment:
| Q |
14 |
aggcccagtttccccggacgtagaggaggacaccaccaacaagaggagggatctgaggaacaaaatgaaggtagcagcgtgctgagtggtttcagctcag |
113 |
Q |
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||||||||||||||||||||||||||||||| ||| ||||||||| ||||||||||||||||||| ||||||||||| |||||||||||||||||||||| |
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| T |
32243309 |
aggcccagtttccccggacgtagaggaggacgccaacaacaagagaagggatctgaggaacaaaacgaaggtagcagtgtgctgagtggtttcagctcag |
32243210 |
T |
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| Q |
114 |
agtttttagcgcaggctctcaacacggatcaggatacagctaagagactacaatccccacgcgaccagaggagccaaatcgtgagagtagagggcggtct |
213 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32243209 |
agtttttagcgcaggcactcaacacggatcaggatacagctaagagacttcaatctccacgcgaccagaggagccaaatcgtgagagtagagggcggtct |
32243110 |
T |
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| Q |
214 |
cagcatcatcagtcctgagtggcagcaagaagatgaagaatatgaaagaagtcccgaggaggaagaagatgaagggagatcaagacaccttcttagac |
311 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||| ||||| |||||||| ||| ||||| |
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| T |
32243109 |
cagcatcatcagccctgagtggcagcaagaagatgaagaatacgaaagaagtcacgaggaggaagaagatgaacggagaccaagacacattcgtagac |
32243012 |
T |
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