View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19203_high_6 (Length: 315)
Name: NF19203_high_6
Description: NF19203
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19203_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 228; Significance: 1e-126; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 22 - 286
Target Start/End: Original strand, 15525005 - 15525275
Alignment:
| Q |
22 |
catcatcacatccctcgtaagaggtatatcctccgattctagatcaagtacctgctgtagtgcttgacttaggtgttgcatccgcagattcaaatcaaca |
121 |
Q |
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| T |
15525005 |
catcatcacatccctcgtaagaggtatatcctccgtttctagatcaagtacctgctgtagtgcttgacttaggtgttgtatccgcagattcaaatcaaca |
15525104 |
T |
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| Q |
122 |
ataacatgctgcgagatgcaacaagcgtttgttcaattattcaagaatagtttaaccattgtacttaaagcattgaatctagaataggataaacatacaa |
221 |
Q |
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| T |
15525105 |
ataacatgctgcgagatgcaacaagcgtttgttcaattattcaagaacagtttaaccattgtacttaaagcattgaatctaaaataggataaacatacaa |
15525204 |
T |
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| Q |
222 |
tggaacat------tcataactgatatctggcacacaataatgaaacaaattagtaatgcgaggatacctc |
286 |
Q |
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| T |
15525205 |
tggaacattcataatcataactgatatctggcacacaataatgaaacaaattattaatgcgaggatacctc |
15525275 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 111 - 237
Target Start/End: Original strand, 15544656 - 15544778
Alignment:
| Q |
111 |
tcaaatcaacaataacatgctgcgagatgcaacaagcgtttgttcaattattcaagaatagtttaaccattgtacttaaagcattgaatctagaatagga |
210 |
Q |
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| T |
15544656 |
tcaaatcatcaataacatgctgcaagatgcaacaagcttttgttcaattatttatgaacaatttaactatt----ataaagcattgaaactataatagca |
15544751 |
T |
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| Q |
211 |
taaacatacaatggaacattcataact |
237 |
Q |
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| T |
15544752 |
taaacataaaatggaacattcaaaact |
15544778 |
T |
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