View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19203_low_1 (Length: 559)

Name: NF19203_low_1
Description: NF19203
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19203_low_1
NF19203_low_1
[»] chr3 (4 HSPs)
chr3 (324-544)||(41415605-41415825)
chr3 (326-447)||(55447916-55448037)
chr3 (434-528)||(55447804-55447896)
chr3 (324-429)||(24565335-24565440)
[»] chr4 (6 HSPs)
chr4 (351-544)||(41418310-41418503)
chr4 (345-436)||(45355251-45355342)
chr4 (345-436)||(45368992-45369083)
chr4 (341-440)||(49525807-49525906)
chr4 (39-73)||(51902133-51902167)
chr4 (291-323)||(24560509-24560541)
[»] scaffold0009 (1 HSPs)
scaffold0009 (323-429)||(18796-18902)
[»] chr1 (1 HSPs)
chr1 (324-416)||(6813387-6813479)
[»] chr6 (2 HSPs)
chr6 (317-408)||(7968364-7968452)
chr6 (191-223)||(14487738-14487770)
[»] chr7 (3 HSPs)
chr7 (324-416)||(36366877-36366969)
chr7 (331-429)||(46194021-46194119)
chr7 (191-223)||(3624048-3624080)
[»] chr5 (1 HSPs)
chr5 (345-442)||(17902241-17902338)
[»] scaffold0034 (1 HSPs)
scaffold0034 (190-223)||(83528-83561)
[»] chr2 (1 HSPs)
chr2 (190-223)||(23834391-23834424)


Alignment Details
Target: chr3 (Bit Score: 201; Significance: 1e-109; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 324 - 544
Target Start/End: Original strand, 41415605 - 41415825
Alignment:
Q  324 agggggcgtttgtttcccctctacaaattaagttcctgggaatgtaagatgggaactatttattccaatgtttggtacacatgcatacaaaaaggttcta 423  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |    
T  41415605 agggggcgtttgtttcccctctacaaaataagttcctgggaatgtaagatgggaactatttattgcaatgtttggtacacatgcatacaaaaaggttcca 41415704  T
Q  424 aggaattaattatacccggtaattatttttaactatattatcccatttttaattcccagcacaaaggatgggaatgacttattcccagcggttaacatcc 523  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  41415705 aggaattaattatacccggtaattatttttaactatattctcccattttttattcccagcacaaaggatgggaatgacttattcccagcggttaacatcc 41415804  T
Q  524 attaatatctcaaaagttcat 544  Q
    |||||||||||||||||||||    
T  41415805 attaatatctcaaaagttcat 41415825  T

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Target: chr3; HSP #2
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 326 - 447
Target Start/End: Complemental strand, 55448037 - 55447916
Alignment:
Q  326 ggggcgtttgtttcccctctacaaattaagttcctgggaatgtaagatgggaactatttattccaatgtttggtacacatgcatacaaaaaggttctaag 425  Q
    |||||||||||||| | |||||||| |||||| ||| ||||||||||| ||||||||||||||||||||||| |||||||||||| ||||||||| ||||    
T  55448037 ggggcgtttgtttcacttctacaaaataagtttctgagaatgtaagataggaactatttattccaatgtttgatacacatgcataaaaaaaggttataag 55447938  T
Q  426 gaattaattatacccggtaatt 447  Q
    ||||||||||||||||||||||    
T  55447937 gaattaattatacccggtaatt 55447916  T

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Target: chr3; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 434 - 528
Target Start/End: Complemental strand, 55447896 - 55447804
Alignment:
Q  434 tatacccggtaattatttttaactatattatcccatttttaattcccagcacaaaggatgggaatgacttattcccagcggttaacatccattaa 528  Q
    |||||||| |||||||||| ||||||  |||||||||||| ||||||| | |||||||||||||| |||||||||||||||||||||||||||||    
T  55447896 tatacccgataattattttcaactat--tatcccattttttattcccaacccaaaggatgggaatcacttattcccagcggttaacatccattaa 55447804  T

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Target: chr3; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 324 - 429
Target Start/End: Original strand, 24565335 - 24565440
Alignment:
Q  324 agggggcgtttgtttcccctctacaaattaagttcctgggaatgtaagatgggaactatttattccaatgtttggtacacatgcatacaaaaaggttcta 423  Q
    |||||| ||||||||| |||||  ||||||  ||||| ||||| ||||||||||| |||||||||| |||||||||| |||||||||||||||  ||| |    
T  24565335 agggggtgtttgtttcacctctgtaaattagattcctaggaatctaagatgggaattatttattcctatgtttggtatacatgcatacaaaaatattcca 24565434  T
Q  424 aggaat 429  Q
    ||||||    
T  24565435 aggaat 24565440  T

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Target: chr4 (Bit Score: 154; Significance: 2e-81; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 351 - 544
Target Start/End: Complemental strand, 41418503 - 41418310
Alignment:
Q  351 ttaagttcctgggaatgtaagatgggaactatttattccaatgtttggtacacatgcatacaaaaaggttctaaggaattaattatacccggtaattatt 450  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||| ||||||||||| ||||||||||||    
T  41418503 ttaagttcctgggaatgtaagatgggaactatttattccaatatttggtacacatgcatacaaaaaggttccaagaaattaattatatccggtaattatt 41418404  T
Q  451 tttaactatattatcccatttttaattcccagcacaaaggatgggaatgacttattcccagcggttaacatccattaatatctcaaaagttcat 544  Q
    ||||||||||||||||||| ||| ||||||| || ||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||    
T  41418403 tttaactatattatcccatattttattcccaacagaaaggatgggaatgacttattccaagcagttaacatccattaatatctcaaaagttcat 41418310  T

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Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 345 - 436
Target Start/End: Original strand, 45355251 - 45355342
Alignment:
Q  345 tacaaattaagttcctgggaatgtaagatgggaactatttattccaatgtttggtacacatgcatacaaaaaggttctaaggaattaattat 436  Q
    |||||||| | ||||  ||||| ||||||||||| |||||||||| |||||||||| ||||||| |||||||  ||| ||||||| ||||||    
T  45355251 tacaaattgaattcccaggaatctaagatgggaattatttattcccatgtttggtagacatgcacacaaaaatattccaaggaatgaattat 45355342  T

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Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 345 - 436
Target Start/End: Original strand, 45368992 - 45369083
Alignment:
Q  345 tacaaattaagttcctgggaatgtaagatgggaactatttattccaatgtttggtacacatgcatacaaaaaggttctaaggaattaattat 436  Q
    |||||||| | ||||  ||||| ||||||||||| |||||||||| |||||||||| ||||||| |||||||  ||| ||||||| ||||||    
T  45368992 tacaaattgaattcccaggaatctaagatgggaattatttattcccatgtttggtagacatgcacacaaaaatattccaaggaatgaattat 45369083  T

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Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 341 - 440
Target Start/End: Original strand, 49525807 - 49525906
Alignment:
Q  341 cctctacaaattaagttcctgggaatgtaagatgggaactatttattccaatgtttggtacacatgcatacaaaaaggttctaaggaattaattataccc 440  Q
    |||||||||| ||||||||   |||||||||||||||| |||||| ||  ||||||| || ||||  | |||||||  ||||||||||||||||||||||    
T  49525807 cctctacaaactaagttcccaagaatgtaagatgggaaatatttactcacatgtttgatatacatatacacaaaaacattctaaggaattaattataccc 49525906  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 39 - 73
Target Start/End: Complemental strand, 51902167 - 51902133
Alignment:
Q  39 agggttaatggtgttttacccctataatatatgtt 73  Q
    ||||||||||||||||||||||| |||||||||||    
T  51902167 agggttaatggtgttttacccctgtaatatatgtt 51902133  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 291 - 323
Target Start/End: Complemental strand, 24560541 - 24560509
Alignment:
Q  291 ctatattacagggataaaacatcattaaccctt 323  Q
    ||||||||||||||||||||| |||||||||||    
T  24560541 ctatattacagggataaaacaccattaaccctt 24560509  T

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Target: scaffold0009 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 323 - 429
Target Start/End: Complemental strand, 18902 - 18796
Alignment:
Q  323 tagggggcgtttgtttcccctctacaaattaagttcctgggaatgtaagatgggaactatttattccaatgtttggtacacatgcatacaaaaaggttct 422  Q
    ||||||| ||||||||| |||||  ||||||  ||||| ||||| |||| |||||| |||||||||| |||||||||| |||||||||||||||  |||     
T  18902 tagggggtgtttgtttcacctctgtaaattagattcctaggaatctaaggtgggaattatttattcctatgtttggtatacatgcatacaaaaatattca 18803  T
Q  423 aaggaat 429  Q
    |||||||    
T  18802 aaggaat 18796  T

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Target: chr1 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 324 - 416
Target Start/End: Complemental strand, 6813479 - 6813387
Alignment:
Q  324 agggggcgtttgtttcccctctacaaattaagttcctgggaatgtaagatgggaactatttattccaatgtttggtacacatgcatacaaaaa 416  Q
    |||||| ||||||||| |||||  ||||||  ||||| ||||| ||||||| ||| |||||||||| |||||||||| |||||||||||||||    
T  6813479 agggggtgtttgtttcacctctgtaaattagattcctaggaatctaagatgagaattatttattcctatgtttggtatacatgcatacaaaaa 6813387  T

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Target: chr6 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 317 - 408
Target Start/End: Original strand, 7968364 - 7968452
Alignment:
Q  317 aacccttagggggcgtttgtttcccctctacaaattaagttcctgggaatgtaagatgggaactatttattccaatgtttggtacacatgca 408  Q
    |||| |||||||||||||||||| ||| |||||||||| ||||   |||| |||||||||||  ||||||||| ||||||| ||||||||||    
T  7968364 aacctttagggggcgtttgtttcacctatacaaattaaattcc---gaatctaagatgggaataatttattcccatgtttgatacacatgca 7968452  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 191 - 223
Target Start/End: Original strand, 14487738 - 14487770
Alignment:
Q  191 tcgtttttgtatgacctattagaggggtattcc 223  Q
    |||||||||||||||||||||| ||||||||||    
T  14487738 tcgtttttgtatgacctattaggggggtattcc 14487770  T

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Target: chr7 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 324 - 416
Target Start/End: Complemental strand, 36366969 - 36366877
Alignment:
Q  324 agggggcgtttgtttcccctctacaaattaagttcctgggaatgtaagatgggaactatttattccaatgtttggtacacatgcatacaaaaa 416  Q
    |||||| ||||||||| ||||   ||||||  ||||| ||||| ||||||| ||| |||||||||| |||||||||| |||||||||||||||    
T  36366969 agggggtgtttgtttcacctcagtaaattagattcctaggaatctaagatgagaattatttattcctatgtttggtatacatgcatacaaaaa 36366877  T

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Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 331 - 429
Target Start/End: Complemental strand, 46194119 - 46194021
Alignment:
Q  331 gtttgtttcccctctacaaattaagttcctgggaatgtaagatgggaactatttattccaatgtttggtacacatgcatacaaaaaggttctaaggaat 429  Q
    ||||||||| |||||  ||||||  ||| | ||||| ||||||||||| |||||||||  |||||||||| |||||||||||||||  ||| |||||||    
T  46194119 gtttgtttcacctctgtaaattagattcttaggaatctaagatgggaattatttattcttatgtttggtatacatgcatacaaaaatattccaaggaat 46194021  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 191 - 223
Target Start/End: Complemental strand, 3624080 - 3624048
Alignment:
Q  191 tcgtttttgtatgacctattagaggggtattcc 223  Q
    ||||||||| |||||||||||||||||||||||    
T  3624080 tcgtttttgaatgacctattagaggggtattcc 3624048  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 345 - 442
Target Start/End: Complemental strand, 17902338 - 17902241
Alignment:
Q  345 tacaaattaagttcctgggaatgtaagatgggaactatttattccaatgtttggtacacatgcatacaaaaaggttctaaggaattaattatacccgg 442  Q
    |||||||| | ||||  ||||| ||||||||||| |||||||||| |||||||||| ||||||| |||||||  ||| | ||||| |||||| |||||    
T  17902338 tacaaattgaattcccaggaatctaagatgggaattatttattcccatgtttggtagacatgcacacaaaaatattccagggaatgaattattcccgg 17902241  T

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Target: scaffold0034 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 190 - 223
Target Start/End: Complemental strand, 83561 - 83528
Alignment:
Q  190 gtcgtttttgtatgacctattagaggggtattcc 223  Q
    ||||||||| ||||||||||||||||||||||||    
T  83561 gtcgtttttttatgacctattagaggggtattcc 83528  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 190 - 223
Target Start/End: Original strand, 23834391 - 23834424
Alignment:
Q  190 gtcgtttttgtatgacctattagaggggtattcc 223  Q
    ||||||||| ||||||||||||||||||||||||    
T  23834391 gtcgtttttttatgacctattagaggggtattcc 23834424  T

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