View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19204_high_1 (Length: 536)
Name: NF19204_high_1
Description: NF19204
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19204_high_1 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 516; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 516; E-Value: 0
Query Start/End: Original strand, 17 - 536
Target Start/End: Complemental strand, 34239995 - 34239476
Alignment:
| Q |
17 |
catcttccacgcttccctcagctcttctttttgactgtgatggagtccttgtagatactgaaaaagatggtcaccgcatttctttcaatgatactttcca |
116 |
Q |
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| T |
34239995 |
catcttccacgcttccctcagctcttctttttgactgtgatggagtccttgtagatactgaaaaagatggtcaccgcatttctttcaatgatactttcca |
34239896 |
T |
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| Q |
117 |
agaggtgcctcctgctttttaatctttcttttttcacaagtaaatattacttcttattatggttataactattcttaatagaagtcattgataagataaa |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34239895 |
agaggtgcctcctgctttttaatctttcttttttcacaagtaaatattacttcttattatggttataactattcttaatagaagtcattgataagataaa |
34239796 |
T |
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| Q |
217 |
agtatagaacaactagcgtgtacaataagacttatatagccgattagaacaactaacttgtgtaactaacttttacatctaaccttagtaatcaggtttg |
316 |
Q |
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| T |
34239795 |
agtatagaacaactagcgtgtacaataagacttatatagccgattagaacaactaacttgtgtaactaacttttacatctaaccttagtaatcaggtttg |
34239696 |
T |
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| Q |
317 |
aatcctagaactagaatgccttcatcctacctcagccacctacgccttggaactagtatgcaatcgaaagtagtacactaactgagatgctttagcaata |
416 |
Q |
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| T |
34239695 |
aatcctagaactagaatgtcttcatcctacctcagccacctacgccttggaactagtatgcaatcgaaagtagtacactaactgagatgctttagcaata |
34239596 |
T |
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| Q |
417 |
acacttgaatgtgttgttgagttgtgcagaaagaactaggcgttacatgggacgtggaattgtacggtgagttgctcaaaattggaggtggaaaagaaag |
516 |
Q |
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| T |
34239595 |
acacttgaatgtgttgttgagttgtgcagaaagaactaggcgttacatgggacgtggaattgtacggtgagttgctcaaaattggaggtggaaaagaaag |
34239496 |
T |
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| Q |
517 |
gtgagtagtaattcaaatac |
536 |
Q |
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| T |
34239495 |
gtgagtagtaattcaaatac |
34239476 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 240 - 298
Target Start/End: Complemental strand, 35094025 - 35093967
Alignment:
| Q |
240 |
aataagacttatatagccgattagaacaactaacttgtgtaactaacttttacatctaa |
298 |
Q |
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| T |
35094025 |
aataagacttatataggcaatgagagcaactaactagtgtaactaacttttacatctaa |
35093967 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 184 - 220
Target Start/End: Complemental strand, 484020 - 483984
Alignment:
| Q |
184 |
actattcttaatagaagtcattgataagataaaagta |
220 |
Q |
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| T |
484020 |
actattcttaatagaagtcattgataagagaaaagta |
483984 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 240 - 297
Target Start/End: Complemental strand, 40620 - 40563
Alignment:
| Q |
240 |
aataagacttatatagccgattagaacaactaacttgtgtaactaacttttacatcta |
297 |
Q |
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|||||| ||||||||| | |||||| |||||||| |||||||| ||||||||||||| |
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| T |
40620 |
aataaggcttatatagtcaattagattaactaactagtgtaacttacttttacatcta |
40563 |
T |
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