View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19204_high_2 (Length: 443)
Name: NF19204_high_2
Description: NF19204
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19204_high_2 |
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Alignment Details
Target: chr8 (Bit Score: 187; Significance: 1e-101; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 140 - 334
Target Start/End: Complemental strand, 44639768 - 44639574
Alignment:
| Q |
140 |
tccatattggtttgtctttgagaaaaactaaccaaaatatttgtactatttgatggcatatgaaccaaattcatataggtcctcctcctcttactaaaat |
239 |
Q |
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| T |
44639768 |
tccatgttggtttgtctttgagaaaaactaaccaaaatatttgtactatttgatggcatatgaaccaaattcatataggtcctcctgctcttactaaaat |
44639669 |
T |
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| Q |
240 |
atgatggcatacacaaccagctgtaagtctagctcaaacctagtggtgaaagctctcacaaaaattgaactaaggcggcatcctaattcctacac |
334 |
Q |
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| T |
44639668 |
atgatggcatacacaaccagctgtaagtctagctcaaacctagtggtgaaagctctcacaaaaattgaactaaggcggcatcctaattcctacac |
44639574 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 11 - 144
Target Start/End: Complemental strand, 44639984 - 44639851
Alignment:
| Q |
11 |
cagagagagtataagaagaactcattctaagctttcttcttgtccaaataaatgtatatattatgaagcgtaactttatacttcctccaactttgaagtg |
110 |
Q |
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| T |
44639984 |
cagagagagtataagaagaactcattctaagctttcttcttgtccaaataaatgtatatattatgaagcgtaactttatacttcctccaactttgaagtg |
44639885 |
T |
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| Q |
111 |
aatctcagtaacatgtctgtttctttttctccat |
144 |
Q |
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| T |
44639884 |
aatctcagtaacatgtctgtttctttttctccat |
44639851 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 335 - 426
Target Start/End: Complemental strand, 44639548 - 44639458
Alignment:
| Q |
335 |
agtagtgttcacattacaatatgacattgaaaccaacctcttggaggttttttcccatgcactgtgtgcattctgagaaatgtggacttatt |
426 |
Q |
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| T |
44639548 |
agtagtgttcacattacaatatgacattgaaaccaacctcttggaggt-ttttcccaagcactgtgtgcattctgagaaatgtggacttatt |
44639458 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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