View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19204_high_4 (Length: 253)
Name: NF19204_high_4
Description: NF19204
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19204_high_4 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 192; Significance: 1e-104; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 7584303 - 7584068
Alignment:
| Q |
1 |
ttcctctgcatttgaagctcccccttatactatcagcaaatgtcaaaaattagaaatcagcatctgagaagaactataagaaacatcaagcttaaaaaca |
100 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
7584303 |
ttcctctgtatttgaagctcccccttatactatcagcaaatgtcaaaaattagaaatcagcatctgagaagaactataagaaacatcaagattaaaaaca |
7584204 |
T |
|
| Q |
101 |
gtagttcttctaaaaacatcattcaattcttctatnnnnnnnngttgtccttgactcttggatagaaagtgaaagttgagcaacatatgcgtgagatgat |
200 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7584203 |
gtagttcttctaaaaacaacattcaattcttctataaaaaaaaattgtccttgactcttggatagaaagtgaaagttgagcaacatatgcgtgagatgat |
7584104 |
T |
|
| Q |
201 |
ctatataccttatgtcttaaattttcgtgatcatcc |
236 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||| |
|
|
| T |
7584103 |
ctatataacttatgtcttaaattttcgtgatcatcc |
7584068 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 16 - 95
Target Start/End: Original strand, 7097021 - 7097100
Alignment:
| Q |
16 |
agctcccccttatactatcagcaaatgtcaaaaattagaaatcagcatctgagaagaactataagaaacatcaagcttaa |
95 |
Q |
| |
|
|||||||||||| |||||||||||||||| |||| ||||| ||||||||||||||||||| ||||||| |||||||||| |
|
|
| T |
7097021 |
agctcccccttacactatcagcaaatgtcgaaaactagaagtcagcatctgagaagaactgtaagaaaagtcaagcttaa |
7097100 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 2 - 92
Target Start/End: Complemental strand, 32492299 - 32492208
Alignment:
| Q |
2 |
tcctctgcat-ttgaagctcccccttatactatcagcaaatgtcaaaaattagaaatcagcatctgagaagaactataagaaacatcaagct |
92 |
Q |
| |
|
|||||||||| |||||||||||||||| ||||||| | ||| ||||||||| ||||||||||| |||||||||||||||||||||||| |
|
|
| T |
32492299 |
tcctctgcatcttgaagctcccccttaccctatcagtagatgatgaaaattagacgtcagcatctgataagaactataagaaacatcaagct |
32492208 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 6 - 74
Target Start/End: Complemental strand, 9623011 - 9622943
Alignment:
| Q |
6 |
ctgcatttgaagctcccccttatactatcagcaaatgtcaaaaattagaaatcagcatctgagaagaac |
74 |
Q |
| |
|
|||||||||||||||||||||| ||||||| ||||||| |||||||||| ||| |||||||||||||| |
|
|
| T |
9623011 |
ctgcatttgaagctcccccttacactatcaataaatgtctaaaattagaagtcaacatctgagaagaac |
9622943 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 6 - 74
Target Start/End: Original strand, 13614234 - 13614302
Alignment:
| Q |
6 |
ctgcatttgaagctcccccttatactatcagcaaatgtcaaaaattagaaatcagcatctgagaagaac |
74 |
Q |
| |
|
|||||||||||||||||||||| ||||||| ||||||| |||||||||| ||| |||||||||||||| |
|
|
| T |
13614234 |
ctgcatttgaagctcccccttacactatcaataaatgtctaaaattagaagtcaacatctgagaagaac |
13614302 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University