View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19204_low_3 (Length: 410)
Name: NF19204_low_3
Description: NF19204
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19204_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 354; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 1 - 403
Target Start/End: Original strand, 29037419 - 29037828
Alignment:
| Q |
1 |
gtctcttttatgagtggtgttgaaacccaaaaaattgtcttttgaaatagttttgattgttttcgtt--agtttctttttgggttgccgtatacttacgg |
98 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
29037419 |
gtctcttttatgagtggtgttgaaacccaaaagattgtcttttgaaatagttttgattgttttcgttgtagtttctttttgggttgccgtatacttacgg |
29037518 |
T |
|
| Q |
99 |
tgtccgttgtagttctattctctagctttgccattcttcttgtacagtatagcttttataatatgatg----tttaaaaa-atatatatatactagtaag |
193 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| ||||||||||||||||||| |
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| T |
29037519 |
tgtccgttgtagttctattctctagctttgccattcttcttgtacagtatagcttttataatatgatgatgtttgaaaaatatatatatatactagtaag |
29037618 |
T |
|
| Q |
194 |
tattctcatgattgctttaaatctgaaagaacaaaaaattatgactatgagcatgagggttctatgcagcctctgttgcttctgccactagatgttggtt |
293 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29037619 |
tattctcatgattgctttaaatctgaaagaacaaaaaagtatgactatgagcatgagggttctatgcagcctctgttgcttctgccactagatgttggtt |
29037718 |
T |
|
| Q |
294 |
gtaacatttatctattgactgagtgttaatctcacagtgacaattgatccttagctgcagaagcaacatccaccttaaaggatctgagctaaaaatttat |
393 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
29037719 |
gtaacatttatctattgactgagtgttaatctcacagtaacaattgatccttagctgcagaagcaacatcgaccttaaaggatctgagctaaaaatttat |
29037818 |
T |
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| Q |
394 |
tcatgatgat |
403 |
Q |
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|||||||||| |
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| T |
29037819 |
tcatgatgat |
29037828 |
T |
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