View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19204_low_4 (Length: 391)
Name: NF19204_low_4
Description: NF19204
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19204_low_4 |
 | |
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| [»] chr5 (10 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 354; Significance: 0; HSPs: 10)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 1 - 391
Target Start/End: Original strand, 13446691 - 13447085
Alignment:
| Q |
1 |
aatgccattcaaagtactcgttgcagcctataaaacgttgtacaatattagtttcttgatta----acattatcaatttctgaaataataaaaattcaga |
96 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||| ||||||||||||||||||||||| |||||||||| |
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|
| T |
13446691 |
aatgccattcaaagtactcgttgcagcctataaaatgttgtacattattagtttcttgattaattaacattatcaatttctgaaataatgaaaattcaga |
13446790 |
T |
|
| Q |
97 |
aattaatcaaatgaatcatatacctgcatctgttctggatcgcggcttactagaaacgagtctgctcctaagtgttctattgcttccttttcctttttag |
196 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13446791 |
aattaatcaaatgaatcatatacctgcatctgttctggatcgcggcttactagaaacgagtctgctcctaagtgttctattgcttccttttcctttttag |
13446890 |
T |
|
| Q |
197 |
gcgacgtactaattacagtcactttagcaccaaaagctttagcaaatttcacagccatatgaccaagtccaccaagacctacaactcctatattcatacc |
296 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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|
| T |
13446891 |
gcgacgtactaattacggtcactttagcaccaaaagctttagcaaatttcacagccatatgaccaagtccaccaagaccaacaactcctatattcatacc |
13446990 |
T |
|
| Q |
297 |
aggcttgtcgagtccaaaatgtctaagaggactatacactgtgactccagcgcaaagaagaggaccggcaccatcaagaggtaagctatcaggaa |
391 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13446991 |
aggcttgtcgagtccaaaatgtcgaagaggactatacactgtgactccagcgcaaagaagaggaccggcaccatcaagaggtaagctatcaggaa |
13447085 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 5 - 391
Target Start/End: Original strand, 13426039 - 13426425
Alignment:
| Q |
5 |
ccattcaaagtactcgttgcagcctat-aaaacgttgtacaatattagtttcttgattaacattatcaatttctgaaataataaaaattcagaaattaat |
103 |
Q |
| |
|
||||||||||||| | ||||||||||| |||||||||||||||||||||||||||||||||||| || |||||||||||||| ||| ||| |||| ||| |
|
|
| T |
13426039 |
ccattcaaagtacccattgcagcctattaaaacgttgtacaatattagtttcttgattaacattctcgatttctgaaataatgaaa-ttcgcaaatcaat |
13426137 |
T |
|
| Q |
104 |
caaatgaatcatatacctgcatctgttctggatcgcggcttactagaaacgagtctgctcctaagtgttctattgcttccttttcctttttaggcgacgt |
203 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| |||||||| ||||||||||| || ||||||| || |
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|
| T |
13426138 |
caaatgaatcatatacctgcatctgatctggatcgcggcttactagaaacgagtcagctcctaaatgttctatcgcttccttttctttgctaggcgatgt |
13426237 |
T |
|
| Q |
204 |
actaattacagtcactttagcaccaaaagctttagcaaatttcacagccatatgaccaagtccaccaagacctacaactcctatattcataccaggcttg |
303 |
Q |
| |
|
||||||||| || || ||||||||||||||||| || ||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||| |
|
|
| T |
13426238 |
actaattactgttacattagcaccaaaagctttggcgaatttcacagccatatgaccaagtccaccaagaccaacaacgcctatattcataccaggcttg |
13426337 |
T |
|
| Q |
304 |
tcgagtccaaaatgtctaagaggactatacactgtgactccagcgcaaagaagaggaccggcaccatcaagaggtaagctatcaggaa |
391 |
Q |
| |
|
|||||| |||||| | |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
13426338 |
tcgagttgaaaatgacgaagaggactatacactgtgactccagcgcaaagaagaggaccggcaacatcaagaggtaagctatcaggaa |
13426425 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 5 - 391
Target Start/End: Original strand, 13419149 - 13419534
Alignment:
| Q |
5 |
ccattcaaagtactcgttgcagcctataaaacgttgtacaatattagtttcttgattaacattatcaatttctgaaataataaaaattcagaaattaatc |
104 |
Q |
| |
|
||||||||||||| | |||||| |||| ||| |||||||||||||||||| ||||||| |||| |||||||| ||||| | || |||| |||| |||| |
|
|
| T |
13419149 |
ccattcaaagtacccattgcagtctatgaaatgttgtacaatattagtttattgattaccattgccaatttctaaaatattttaa-ttcacaaatgaatc |
13419247 |
T |
|
| Q |
105 |
aaatgaatcatatacctgcatctgttctggatcgcggcttactagaaacgagtctgctcctaagtgttctattgcttccttttcctttttaggcgacgta |
204 |
Q |
| |
|
|||||||||||||||||||||||| || |||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| || | |||||| ||| |
|
|
| T |
13419248 |
aaatgaatcatatacctgcatctgatcaggatcgcggcttactagaaacgagtcagctcccaagtgttctattgcttccttttctttgtgaggcgatgta |
13419347 |
T |
|
| Q |
205 |
ctaattacagtcactttagcaccaaaagctttagcaaatttcacagccatatgaccaagtccaccaagacctacaactcctatattcataccaggcttgt |
304 |
Q |
| |
|
|||||||| ||||| |||||||| |||||||| |||||||||||||||||||| ||||||||||||||||| ||||| |||||||||||||||||||||| |
|
|
| T |
13419348 |
ctaattacggtcacattagcaccgaaagcttttgcaaatttcacagccatatggccaagtccaccaagaccaacaacacctatattcataccaggcttgt |
13419447 |
T |
|
| Q |
305 |
cgagtccaaaatgtctaagaggactatacactgtgactccagcgcaaagaagaggaccggcaccatcaagaggtaagctatcaggaa |
391 |
Q |
| |
|
||||| ||||||||| |||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
13419448 |
cgagttcaaaatgtcgaagaggactatacactgtgattccagcgcaaagaagaggaccggcagcatcaagaggtaagctatcaggaa |
13419534 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 117 - 380
Target Start/End: Original strand, 13453764 - 13454027
Alignment:
| Q |
117 |
tacctgcatctgttctggatcgcggcttactagaaacgagtctgctcctaagtgttctattgcttccttttcctttttaggcgacgtactaattacagtc |
216 |
Q |
| |
|
||||| |||||| | |||||| ||||||| |||||| ||||| |||| ||||||||||| ||||||||||||||||||||| || ||||||||||| ||| |
|
|
| T |
13453764 |
taccttcatctgctttggatcacggcttattagaaatgagtccgctcgtaagtgttctaatgcttccttttcctttttaggtgatgtactaattacggtc |
13453863 |
T |
|
| Q |
217 |
actttagcaccaaaagctttagcaaatttcacagccatatgaccaagtccaccaagacctacaactcctatattcataccaggcttgtcgagtccaaaat |
316 |
Q |
| |
|
|| |||||||| |||||||| || |||||||| |||||||| ||||||||||||||||| ||||| |||||||||||| ||||||||||||||||||||| |
|
|
| T |
13453864 |
acattagcaccgaaagctttggcgaatttcacggccatatggccaagtccaccaagaccaacaacacctatattcatatcaggcttgtcgagtccaaaat |
13453963 |
T |
|
| Q |
317 |
gtctaagaggactatacactgtgactccagcgcaaagaagaggaccggcaccatcaagaggtaa |
380 |
Q |
| |
|
||| |||||||||||| || || | ||||| ||||| |||||| | || ||||||||||||| |
|
|
| T |
13453964 |
gtcgaagaggactatatacggttatcccagcacaaaggagaggagcagctgcatcaagaggtaa |
13454027 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 160 - 379
Target Start/End: Original strand, 13412958 - 13413177
Alignment:
| Q |
160 |
gctcctaagtgttctattgcttccttttcctttttaggcgacgtactaattacagtcactttagcaccaaaagctttagcaaatttcacagccatatgac |
259 |
Q |
| |
|
||||||||||||||||||||||||||||| || |||||||| ||||||||||| || || |||||||| |||||||| |||||||||||||||||||| | |
|
|
| T |
13412958 |
gctcctaagtgttctattgcttccttttctttgttaggcgatgtactaattacggtaacattagcaccgaaagctttggcaaatttcacagccatatggc |
13413057 |
T |
|
| Q |
260 |
caagtccaccaagacctacaactcctatattcataccaggcttgtcgagtccaaaatgtctaagaggactatacactgtgactccagcgcaaagaagagg |
359 |
Q |
| |
|
|||||||||||||||| ||||| ||||||| | ||||||||| |||||||||||| || |||||||||||| || ||||| ||||| ||||| ||||| |
|
|
| T |
13413058 |
caagtccaccaagaccaacaacacctatatgtaaaccaggcttatcgagtccaaaaaatcgaagaggactatatacggtgacaccagcacaaaggagagg |
13413157 |
T |
|
| Q |
360 |
accggcaccatcaagaggta |
379 |
Q |
| |
|
||| ||| |||||||||| |
|
|
| T |
13413158 |
accagcaaattcaagaggta |
13413177 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 160 - 359
Target Start/End: Complemental strand, 13385623 - 13385424
Alignment:
| Q |
160 |
gctcctaagtgttctattgcttccttttcctttttaggcgacgtactaattacagtcactttagcaccaaaagctttagcaaatttcacagccatatgac |
259 |
Q |
| |
|
||||||||||||||| ||||||||||||| || ||| || ||||||||||| ||||| ||||||||||||||||| ||||||||||||||||| |||| |
|
|
| T |
13385623 |
gctcctaagtgttcttttgcttccttttctttgctagcagatgtactaattacggtcacattagcaccaaaagctttggcaaatttcacagccatgtgac |
13385524 |
T |
|
| Q |
260 |
caagtccaccaagacctacaactcctatattcataccaggcttgtcgagtccaaaatgtctaagaggactatacactgtgactccagcgcaaagaagagg |
359 |
Q |
| |
|
|||| ||||||||||| ||||| || | || | |||||| |||||||||||||| | |||||||||||| ||||| |||| ||||| ||||| ||||| |
|
|
| T |
13385523 |
caagcccaccaagaccaacaacaccgacatgaagaccaggtttgtcgagtccaaagtatctaagaggactgtacacagtgatcccagcacaaaggagagg |
13385424 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 160 - 335
Target Start/End: Complemental strand, 13393851 - 13393676
Alignment:
| Q |
160 |
gctcctaagtgttctattgcttccttttcctttttaggcgacgtactaattacagtcactttagcaccaaaagctttagcaaatttcacagccatatgac |
259 |
Q |
| |
|
||||||| || |||||||||||| || || || || || || ||||||||||| || || ||||| ||||||||||| ||||| |||||| ||| |||| |
|
|
| T |
13393851 |
gctcctaggttttctattgcttctttctctttgttgggtgatgtactaattactgttacattagctccaaaagcttttgcaaacttcacacccaagtgac |
13393752 |
T |
|
| Q |
260 |
caagtccaccaagacctacaactcctatattcataccaggcttgtcgagtccaaaatgtctaagaggactatacac |
335 |
Q |
| |
|
|||||||||||||||| |||| |||||||||||||||||||||||||||||||||| || ||||||||||||||| |
|
|
| T |
13393751 |
caagtccaccaagaccaacaatacctatattcataccaggcttgtcgagtccaaaatatcgaagaggactatacac |
13393676 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 160 - 359
Target Start/End: Complemental strand, 13389444 - 13389245
Alignment:
| Q |
160 |
gctcctaagtgttctattgcttccttttcctttttaggcgacgtactaattacagtcactttagcaccaaaagctttagcaaatttcacagccatatgac |
259 |
Q |
| |
|
||||||||||||||||||||||| || || || || || || |||||||| || || || | |||||||| ||||| ||||||||||||||||| |||| |
|
|
| T |
13389444 |
gctcctaagtgttctattgcttctttctctttgttgggtgatgtactaatcactgttacaatcgcaccaaatgctttggcaaatttcacagccatgtgac |
13389345 |
T |
|
| Q |
260 |
caagtccaccaagacctacaactcctatattcataccaggcttgtcgagtccaaaatgtctaagaggactatacactgtgactccagcgcaaagaagagg |
359 |
Q |
| |
|
|||| ||||||||||| ||||| |||||| | |||||| || ||||||||| ||| |||||||||||| ||||| |||| ||||| ||||| ||||| |
|
|
| T |
13389344 |
caagcccaccaagaccaacaacacctatacgaagaccaggtttatcgagtccataatatctaagaggactgtacacagtgatcccagcacaaaggagagg |
13389245 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 154 - 391
Target Start/End: Original strand, 13373039 - 13373276
Alignment:
| Q |
154 |
gagtctgctcctaagtgttctattgcttccttttcctttttaggcgacgtactaattacagtcactttagcaccaaaagctttagcaaatttcacagcca |
253 |
Q |
| |
|
||||| |||||||||||||| || |||||||| | || ||||| || || || || || || || ||||||||||||||||| | |||||||||||||| |
|
|
| T |
13373039 |
gagtcagctcctaagtgttcaatggcttccttctttttgttaggagaagtgcttatcactgttacattagcaccaaaagctttggtaaatttcacagcca |
13373138 |
T |
|
| Q |
254 |
tatgaccaagtccaccaagacctacaactcctatattcataccaggcttgtcgagtccaaaatgtctaagaggactatacactgtgactccagcgcaaag |
353 |
Q |
| |
|
||||||| | |||||||||||| || || || | || | ||||||||||| |||||||||| | | | ||| ||||| ||||||| || || ||||| |
|
|
| T |
13373139 |
tatgacctaatccaccaagaccaaccacacccacatgtaaaccaggcttgttaagtccaaaatatttcaaagggctatatactgtgatccccgcacaaag |
13373238 |
T |
|
| Q |
354 |
aagaggaccggcaccatcaagaggtaagctatcaggaa |
391 |
Q |
| |
|
||||||| | || ||||||| |||||| |||||||| |
|
|
| T |
13373239 |
aagaggagcagcggcatcaagtggtaaggcatcaggaa |
13373276 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 154 - 374
Target Start/End: Original strand, 13378835 - 13379055
Alignment:
| Q |
154 |
gagtctgctcctaagtgttctattgcttccttttcctttttaggcgacgtactaattacagtcactttagcaccaaaagctttagcaaatttcacagcca |
253 |
Q |
| |
|
||||| ||||||||| |||| || |||||||| | || ||||| || ||||| | ||||| || ||| ||||||| ||||| || || |||||||||| |
|
|
| T |
13378835 |
gagtcagctcctaagcgttcaatggcttccttctttttgttaggagaagtacttaccacagttaccttaacaccaaaggctttggcgaacttcacagcca |
13378934 |
T |
|
| Q |
254 |
tatgaccaagtccaccaagacctacaactcctatattcataccaggcttgtcgagtccaaaatgtctaagaggactatacactgtgactccagcgcaaag |
353 |
Q |
| |
|
||||||| | |||||||||||| || || ||||||| || ||||| ||||| | |||||||||| | | || ||||||||||||| ||||| ||||| |
|
|
| T |
13378935 |
tatgacctaatccaccaagaccaaccacacctatatgcagtccaggtttgtcaaatccaaaatgtttcattgggctatacactgtgatcccagcacaaag |
13379034 |
T |
|
| Q |
354 |
aagaggaccggcaccatcaag |
374 |
Q |
| |
|
|||||| ||||| ||||||| |
|
|
| T |
13379035 |
gagaggagcggcagcatcaag |
13379055 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 107; Significance: 2e-53; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 154 - 360
Target Start/End: Original strand, 47601119 - 47601325
Alignment:
| Q |
154 |
gagtctgctcctaagtgttctattgcttccttttcctttttaggcgacgtactaattacagtcactttagcaccaaaagctttagcaaatttcacagcca |
253 |
Q |
| |
|
||||| ||||||||| |||| ||||||| ||||| || ||||| || ||||||||||||||||| ||||| ||||||||||||||||| || ||||||| |
|
|
| T |
47601119 |
gagtcagctcctaagcattctcttgcttctttttctttgttaggtgatgtactaattacagtcacattagccccaaaagctttagcaaacttaacagcca |
47601218 |
T |
|
| Q |
254 |
tatgaccaagtccaccaagacctacaactcctatattcataccaggcttgtcgagtccaaaatgtctaagaggactatacactgtgactccagcgcaaag |
353 |
Q |
| |
|
| |||||||||||||||||||| ||||| ||||||| ||||||||| || ||||||||||||| || |||||||||||||||||||| || || ||||| |
|
|
| T |
47601219 |
tgtgaccaagtccaccaagaccaacaacacctatatgcataccaggtttatcgagtccaaaatatcgaagaggactatacactgtgataccggcacaaag |
47601318 |
T |
|
| Q |
354 |
aagagga |
360 |
Q |
| |
|
||||||| |
|
|
| T |
47601319 |
aagagga |
47601325 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 220 - 275
Target Start/End: Complemental strand, 28430767 - 28430712
Alignment:
| Q |
220 |
ttagcaccaaaagctttagcaaatttcacagccatatgaccaagtccaccaagacc |
275 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28430767 |
ttagcaccaaaagctttggcaaatttcacagccatatgaccaagtccaccaagacc |
28430712 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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