View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19205_high_7 (Length: 337)

Name: NF19205_high_7
Description: NF19205
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19205_high_7
NF19205_high_7
[»] chr3 (5 HSPs)
chr3 (136-314)||(1728979-1729158)
chr3 (1-121)||(1727502-1727622)
chr3 (124-270)||(19638499-19638645)
chr3 (200-259)||(5798564-5798623)
chr3 (200-259)||(18698198-18698257)
[»] chr8 (4 HSPs)
chr8 (118-279)||(18163042-18163203)
chr8 (121-176)||(17012329-17012384)
chr8 (121-176)||(17544817-17544872)
chr8 (121-176)||(45563795-45563850)
[»] chr7 (11 HSPs)
chr7 (130-259)||(16111062-16111191)
chr7 (122-270)||(16404666-16404814)
chr7 (142-311)||(24831717-24831886)
chr7 (141-262)||(27289348-27289469)
chr7 (121-176)||(13877021-13877076)
chr7 (120-259)||(14143438-14143577)
chr7 (121-182)||(16312710-16312771)
chr7 (121-170)||(16549220-16549269)
chr7 (121-170)||(16616393-16616442)
chr7 (45-103)||(27289231-27289289)
chr7 (121-182)||(33603681-33603742)
[»] scaffold0758 (1 HSPs)
scaffold0758 (130-278)||(1972-2120)
[»] chr4 (8 HSPs)
chr4 (121-259)||(39042502-39042640)
chr4 (123-281)||(11451368-11451526)
chr4 (118-262)||(24901753-24901898)
chr4 (121-271)||(17528451-17528601)
chr4 (121-176)||(15867203-15867258)
chr4 (200-281)||(11543209-11543290)
chr4 (123-179)||(17244463-17244519)
chr4 (44-91)||(39042706-39042753)
[»] scaffold0037 (1 HSPs)
scaffold0037 (121-272)||(74894-75045)
[»] chr2 (3 HSPs)
chr2 (118-278)||(26443777-26443926)
chr2 (140-259)||(22674296-22674415)
chr2 (121-176)||(28704374-28704429)
[»] chr1 (2 HSPs)
chr1 (24-121)||(27518805-27518902)
chr1 (122-176)||(17718756-17718810)
[»] scaffold0084 (1 HSPs)
scaffold0084 (121-176)||(46193-46248)
[»] scaffold0183 (1 HSPs)
scaffold0183 (121-182)||(7974-8035)
[»] scaffold0047 (1 HSPs)
scaffold0047 (121-182)||(5967-6028)
[»] scaffold0161 (3 HSPs)
scaffold0161 (122-182)||(13243-13303)
scaffold0161 (122-182)||(17916-17976)
scaffold0161 (122-181)||(20854-20913)
[»] chr6 (3 HSPs)
chr6 (44-93)||(12349486-12349535)
chr6 (121-182)||(19071613-19071674)
chr6 (121-182)||(19446953-19447014)


Alignment Details
Target: chr3 (Bit Score: 136; Significance: 6e-71; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 136 - 314
Target Start/End: Original strand, 1728979 - 1729158
Alignment:
Q  136 acatgaactattggtaattcttctatctctatcaaaaatgtatggtttgatgatagactgaaatataacctacttaacat-aagtcaattttgtcatagt 234  Q
    ||||| ||||||||||||||||||||||||||||||||||| |||||||||||| |||||||| |||||||||||||||| |||||||| ||||||||||    
T  1728979 acatggactattggtaattcttctatctctatcaaaaatgtctggtttgatgatggactgaaacataacctacttaacattaagtcaatgttgtcatagt 1729078  T
Q  235 ggtgatgaagtgatgtttgataagaacatttgcacagtcatcaatgactctaataaatccattgttttcacgagaaagag 314  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||  |||||||    
T  1729079 ggtgatgaactgatgtttgataagaacatttgcacagtcatcaatgagtctaataaatccattgttttcaccggaaagag 1729158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 1 - 121
Target Start/End: Original strand, 1727502 - 1727622
Alignment:
Q  1 ttttctatgctacagaaacactttatgggagaaccaacgcttcagtcatggtacttgaacagtggttactcatgacacatgacaagagaaaagcatattt 100  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||| ||||    
T  1727502 ttttatatgctacagaaacactttatgggagaaccaacgcttcagtcatggtacctggacagtggttactcatgacacatgacaagagaaaagcacattt 1727601  T
Q  101 tccaaacattaacactgaaag 121  Q
    |||||||||||||||||||||    
T  1727602 tccaaacattaacactgaaag 1727622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 124 - 270
Target Start/End: Original strand, 19638499 - 19638645
Alignment:
Q  124 aagattattggtacatgaactattggtaattcttctatctctatcaaaaatgtatggtttgatgatagactgaaatataacctacttaacataagtcaat 223  Q
    ||||| |||||||  ||||||||  |||| |||||||||||||| || ||||| | ||||| |||| |||| | | |||||||||||| ||||||| |||    
T  19638499 aagatcattggtatgtgaactatacgtaactcttctatctctattaataatgtgtagtttgttgatggactaagacataacctacttagcataagtaaat 19638598  T
Q  224 tttgtcatagtggtgatgaagtgatgtttgataagaacatttgcaca 270  Q
    ||||| |||||||| |||| ||||||||||||||||||| |||||||    
T  19638599 tttgtgatagtggttatgatgtgatgtttgataagaacaattgcaca 19638645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 200 - 259
Target Start/End: Original strand, 5798564 - 5798623
Alignment:
Q  200 ataacctacttaacataagtcaattttgtcatagtggtgatgaagtgatgtttgataaga 259  Q
    |||||||| ||| ||| |||||||||||| |||||||  |||||||| ||||||||||||    
T  5798564 ataacctatttagcattagtcaattttgtgatagtggatatgaagtggtgtttgataaga 5798623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 200 - 259
Target Start/End: Original strand, 18698198 - 18698257
Alignment:
Q  200 ataacctacttaacataagtcaattttgtcatagtggtgatgaagtgatgtttgataaga 259  Q
    |||||||||||| ||| ||||  |||||| |||||||| |||| ||||||||||||||||    
T  18698198 ataacctacttagcattagtcggttttgtgatagtggttatgatgtgatgtttgataaga 18698257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 70; Significance: 2e-31; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 118 - 279
Target Start/End: Complemental strand, 18163203 - 18163042
Alignment:
Q  118 aaaggcaagattattggtacatgaactattggtaattcttctatctctatcaaaaatgtatggtttgatgatagactgaaatataacctacttaacataa 217  Q
    |||||||||||||||||||   ||||||||||||| | || ||||| ||| || ||||| ||||||| |||| || ||| | |||||||||||| |||||    
T  18163203 aaaggcaagattattggtatgagaactattggtaactattttatctttattaataatgtttggtttgttgatggattgagacataacctacttagcataa 18163104  T
Q  218 gtcaattttgtcatagtggtgatgaagtgatgtttgataagaacatttgcacagtcatcaat 279  Q
    ||||||||||| ||| |||| |||||||||||||| |||||||||  |||||||| ||||||    
T  18163103 gtcaattttgtgataatggttatgaagtgatgtttaataagaacaactgcacagtaatcaat 18163042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 121 - 176
Target Start/End: Complemental strand, 17012384 - 17012329
Alignment:
Q  121 ggcaagattattggtacatgaactattggtaattcttctatctctatcaaaaatgt 176  Q
    |||||||||||||||||| ||||||||||||| || ||||||||||| || |||||    
T  17012384 ggcaagattattggtacaggaactattggtaactcctctatctctattaataatgt 17012329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 121 - 176
Target Start/End: Original strand, 17544817 - 17544872
Alignment:
Q  121 ggcaagattattggtacatgaactattggtaattcttctatctctatcaaaaatgt 176  Q
    |||||||||||||||||| ||||||||||||| || ||||||||||| || |||||    
T  17544817 ggcaagattattggtacaggaactattggtaactcctctatctctattaataatgt 17544872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 121 - 176
Target Start/End: Complemental strand, 45563850 - 45563795
Alignment:
Q  121 ggcaagattattggtacatgaactattggtaattcttctatctctatcaaaaatgt 176  Q
    |||||||||||||||||| ||||||||||||| || ||||||||||| || |||||    
T  45563850 ggcaagattattggtacaggaactattggtaactcctctatctctattaacaatgt 45563795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 66; Significance: 4e-29; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 130 - 259
Target Start/End: Original strand, 16111062 - 16111191
Alignment:
Q  130 attggtacatgaactattggtaattcttctatctctatcaaaaatgtatggtttgatgatagactgaaatataacctacttaacataagtcaattttgtc 229  Q
    ||||||| |||||||||||| || |||||||||||||| || ||||| ||||||| |||| |||| | | |||||||||||| ||| ||||||||||||     
T  16111062 attggtatatgaactattggcaactcttctatctctattaataatgtgtggtttgttgatggacttagacataacctacttagcattagtcaattttgtg 16111161  T
Q  230 atagtggtgatgaagtgatgtttgataaga 259  Q
    |||||||| |||| ||||||||||||||||    
T  16111162 atagtggttatgatgtgatgtttgataaga 16111191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 122 - 270
Target Start/End: Complemental strand, 16404814 - 16404666
Alignment:
Q  122 gcaagattattggtacatgaactattggtaattcttctatctctatcaaaaatgtatggtttgatgatagactgaaatataacctacttaacataagtca 221  Q
    ||||||| |||||  || ||||||||||||| |||| ||||||||| || ||||| ||||| |  ||||| |||||| ||||| |||||| ||| |||||    
T  16404814 gcaagatcattggatcaggaactattggtaactcttttatctctattaataatgtgtggttggtagatagtctgaaacataacttacttagcatcagtca 16404715  T
Q  222 attttgtcatagtggtgatgaagtgatgtttgataagaacatttgcaca 270  Q
    ||||||| |||||||| |||| |||||||||||||||| || |||||||    
T  16404714 attttgtgatagtggttatgatgtgatgtttgataagaccaattgcaca 16404666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 142 - 311
Target Start/End: Complemental strand, 24831886 - 24831717
Alignment:
Q  142 actattggtaattcttctatctctatcaaaaatgtatggtttgatgatagactgaaatataacctacttaacataagtcaattttgtcatagtggtgatg 241  Q
    ||||||||||| || ||||||||||| || ||||| | ||| |  |||||||| ||  |||||||||||| |||||||||||||||| ||| |||| |||    
T  24831886 actattggtaactcctctatctctattaataatgtttagttagtagatagactcaagcataacctacttagcataagtcaattttgtgatattggttatg 24831787  T
Q  242 aagtgatgtttgataagaacatttgcacagtcatcaatgactctaataaatccattgttttcacgagaaa 311  Q
    ||||  |||||||||||||||  |||||| ||||||   ||||| |  ||||||| |||||||| |||||    
T  24831786 aagtagtgtttgataagaacaactgcacaatcatcagaaactctgacgaatccatagttttcactagaaa 24831717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 141 - 262
Target Start/End: Original strand, 27289348 - 27289469
Alignment:
Q  141 aactattggtaattcttctatctctatcaaaaatgtatggtttgatgatagactgaaatataacctacttaacataagtcaattttgtcatagtggtgat 240  Q
    |||||||||||| ||||||||||||||  | ||| | ||||||| |||| |||| | | |||| ||||||| |||||||||||||||| ||| |||  ||    
T  27289348 aactattggtaactcttctatctctattcataatatttggtttgttgatggactaagacataatctacttagcataagtcaattttgtgataatggatat 27289447  T
Q  241 gaagtgatgtttgataagaaca 262  Q
    || || ||||||||||||||||    
T  27289448 gatgtaatgtttgataagaaca 27289469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 121 - 176
Target Start/End: Complemental strand, 13877076 - 13877021
Alignment:
Q  121 ggcaagattattggtacatgaactattggtaattcttctatctctatcaaaaatgt 176  Q
    |||||||||||||||||||||||||||||||| || ||||||||||| || |||||    
T  13877076 ggcaagattattggtacatgaactattggtaactcctctatctctattaataatgt 13877021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 120 - 259
Target Start/End: Complemental strand, 14143577 - 14143438
Alignment:
Q  120 aggcaagattattggtacatgaactattggtaattcttctatctctatcaaaaatgtatggtttgatgatagactgaaatataacctacttaacataagt 219  Q
    ||||||||| ||||||||| ||||||||||||| || |||||||| || || ||||| ||| | |  ||| | ||  || |||||||||| |  || |||    
T  14143577 aggcaagatcattggtacaggaactattggtaactcctctatctcaattaataatgtgtggctggtagatggtctttaacataacctactaagtattagt 14143478  T
Q  220 caattttgtcatagtggtgatgaagtgatgtttgataaga 259  Q
    ||||||||| ||| |||| |||| |||||||||| |||||    
T  14143477 caattttgtgataatggttatgatgtgatgtttggtaaga 14143438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 121 - 182
Target Start/End: Original strand, 16312710 - 16312771
Alignment:
Q  121 ggcaagattattggtacatgaactattggtaattcttctatctctatcaaaaatgtatggtt 182  Q
    |||||||| ||||||||| ||||||||||||| || |||||||| || || |||||||||||    
T  16312710 ggcaagatcattggtacaggaactattggtaactcctctatctcaattaataatgtatggtt 16312771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 121 - 170
Target Start/End: Original strand, 16549220 - 16549269
Alignment:
Q  121 ggcaagattattggtacatgaactattggtaattcttctatctctatcaa 170  Q
    |||||||| ||||||||| ||||||||||||| || ||||||||||||||    
T  16549220 ggcaagatcattggtacaagaactattggtaactcctctatctctatcaa 16549269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 121 - 170
Target Start/End: Complemental strand, 16616442 - 16616393
Alignment:
Q  121 ggcaagattattggtacatgaactattggtaattcttctatctctatcaa 170  Q
    |||||||| ||||||||| ||||||||||||| || ||||||||||||||    
T  16616442 ggcaagatcattggtacaagaactattggtaactcctctatctctatcaa 16616393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 45 - 103
Target Start/End: Original strand, 27289231 - 27289289
Alignment:
Q  45 gtcatggtacttgaacagtggttactcatgacacatgacaagagaaaagcatattttcc 103  Q
    ||||||||||||| ||||||||| ||| || ||||||||| ||||||||| ||| ||||    
T  27289231 gtcatggtacttggacagtggttgctcgtgtcacatgacaggagaaaagcctatgttcc 27289289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 121 - 182
Target Start/End: Complemental strand, 33603742 - 33603681
Alignment:
Q  121 ggcaagattattggtacatgaactattggtaattcttctatctctatcaaaaatgtatggtt 182  Q
    |||||||| ||||||||||||||||||| ||  || |||||||| ||||| ||||| |||||    
T  33603742 ggcaagatcattggtacatgaactattgatagctcctctatctccatcaataatgtgtggtt 33603681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0758 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: scaffold0758
Description:

Target: scaffold0758; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 130 - 278
Target Start/End: Complemental strand, 2120 - 1972
Alignment:
Q  130 attggtacatgaactattggtaattcttctatctctatcaaaaatgtatggtttgatgatagactgaaatataacctacttaacataagtcaattttgtc 229  Q
    ||||||| ||||||||||||||| |||||||||||||| || ||||| ||||||| |||| |||| | | |||||||||||||||| ||||| ||||||     
T  2120 attggtatatgaactattggtaactcttctatctctattaataatgtgtggtttgttgatggacttagacataacctacttaacattagtcagttttgtg 2021  T
Q  230 atagtggtgatgaagtgatgtttgataagaacatttgcacagtcatcaa 278  Q
    |||||||| |||| |||| ||||| ||||| ||  |||||||| |||||    
T  2020 atagtggttatgatgtgacgtttggtaagagcaactgcacagtaatcaa 1972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 55; Significance: 1e-22; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 121 - 259
Target Start/End: Complemental strand, 39042640 - 39042502
Alignment:
Q  121 ggcaagattattggtacatgaactattggtaattcttctatctctatcaaaaatgtatggtttgatgatagactgaaatataacctacttaacataagtc 220  Q
    |||||||| |||||||||||||||||| |||| || ||||||||||| || ||||| ||||| |  ||| | || | | |||||||||||| ||| ||||    
T  39042640 ggcaagatcattggtacatgaactattagtaactcctctatctctattaataatgtgtggttggtagatggtcttagacataacctacttagcattagtc 39042541  T
Q  221 aattttgtcatagtggtgatgaagtgatgtttgataaga 259  Q
    | |||||| |||||||| |||| ||||||||||||||||    
T  39042540 agttttgtgatagtggttatgatgtgatgtttgataaga 39042502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 123 - 281
Target Start/End: Original strand, 11451368 - 11451526
Alignment:
Q  123 caagattattggtacatgaactattggtaattcttctatctctatcaaaaatgtatggtttgatgatagactgaaatataacctacttaacataagtcaa 222  Q
    ||||||| |||||||  | ||||||||||| |||| |||||| ||||| |||||||| || | | || |||| | | ||||||||||||  |||||||||    
T  11451368 caagattgttggtacggggactattggtaactcttttatctcaatcaataatgtatgcttagtttatggactaagacataacctacttattataagtcaa 11451467  T
Q  223 ttttgtcatagtggtgatgaagtgatgtttgataagaacatttgcacagtcatcaatga 281  Q
    |||||| |||||||  || |||||  ||||||||||||||  || ||| ||||||||||    
T  11451468 ttttgtgatagtgggtataaagtggagtttgataagaacacatgtacaatcatcaatga 11451526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 118 - 262
Target Start/End: Original strand, 24901753 - 24901898
Alignment:
Q  118 aaaggcaagattattggtacatgaactattggtaattctt-ctatctctatcaaaaatgtatggtttgatgatagactgaaatataacctacttaacata 216  Q
    |||||||||||||||| |||||  ||||||||||||  || |||||||||| || ||||| ||||| | |||| |||| ||| | ||| |||||| |  |    
T  24901753 aaaggcaagattattgttacatagactattggtaataattcctatctctatgaataatgtttggttagttgatggactaaaacaaaacttacttatctga 24901852  T
Q  217 agtcaattttgtcatagtggtgatgaagtgatgtttgataagaaca 262  Q
    | |||||||||| |||||||| ||||| |||||||| |||||||||    
T  24901853 aatcaattttgtgatagtggttatgaaatgatgtttaataagaaca 24901898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 121 - 271
Target Start/End: Original strand, 17528451 - 17528601
Alignment:
Q  121 ggcaagattattggtacatgaactattggtaattcttctatctctatcaaaaatgtatggtttgatgatagactgaaatataacctacttaacataagtc 220  Q
    ||||| || |||||||  |||||| ||||||| |||| ||||||||| || ||||| ||||||  |||| |||  | |||||| ||||||| ||| ||||    
T  17528451 ggcaaaatcattggtatgtgaactgttggtaactcttatatctctattaataatgtgtggtttattgatggacatagatataaactacttagcattagtc 17528550  T
Q  221 aattttgtcatagtggtgatgaagtgatgtttgataagaacatttgcacag 271  Q
    ||||||||  ||||||| |||| ||||||||| ||| |||||  |||||||    
T  17528551 aattttgtggtagtggttatgatgtgatgttttatacgaacaactgcacag 17528601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 121 - 176
Target Start/End: Original strand, 15867203 - 15867258
Alignment:
Q  121 ggcaagattattggtacatgaactattggtaattcttctatctctatcaaaaatgt 176  Q
    |||||||||||||||||||||||||||||||| || | ||||||||| || |||||    
T  15867203 ggcaagattattggtacatgaactattggtaactcatttatctctattaataatgt 15867258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 200 - 281
Target Start/End: Complemental strand, 11543290 - 11543209
Alignment:
Q  200 ataacctacttaacataagtcaattttgtcatagtggtgatgaagtgatgtttgataagaacatttgcacagtcatcaatga 281  Q
    ||||||||||||  ||||||||||||||| |||||||  || |||||  ||||||||||||||  || ||| ||||||||||    
T  11543290 ataacctacttattataagtcaattttgtgatagtgggtataaagtggagtttgataagaacacatgtacaatcatcaatga 11543209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 123 - 179
Target Start/End: Complemental strand, 17244519 - 17244463
Alignment:
Q  123 caagattattggtacatgaactattggtaattcttctatctctatcaaaaatgtatg 179  Q
    |||||| ||||||||||||||||||||||| || |||||||| || || ||||||||    
T  17244519 caagatcattggtacatgaactattggtaactcctctatctcaattaataatgtatg 17244463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 44 - 91
Target Start/End: Complemental strand, 39042753 - 39042706
Alignment:
Q  44 agtcatggtacttgaacagtggttactcatgacacatgacaagagaaa 91  Q
    ||||||||||| || ||||||||| |||| ||||||||||||||||||    
T  39042753 agtcatggtacctggacagtggttgctcacgacacatgacaagagaaa 39042706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0037 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0037
Description:

Target: scaffold0037; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 121 - 272
Target Start/End: Complemental strand, 75045 - 74894
Alignment:
Q  121 ggcaagattattggtacatgaactattggtaattcttctatctctatcaaaaatgtatggtttgatgatagactgaaatataacctacttaacataagtc 220  Q
    |||||||||||||||||| |||||| |||||| || ||||||||||| || ||||| ||||| |  ||| | || ||| ||||||| ||||  || ||||    
T  75045 ggcaagattattggtacaggaactactggtaactcctctatctctattaataatgtgtggttggtagatggtctaaaacataacctgcttagtatcagtc 74946  T
Q  221 aattttgtcatagtggtgatgaagtgatgtttgataagaacatttgcacagt 272  Q
    | |||||| ||| |||| |||| |||||||||||||||| ||  ||||||||    
T  74945 atttttgtgataatggttatgatgtgatgtttgataagaccaactgcacagt 74894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 118 - 278
Target Start/End: Complemental strand, 26443926 - 26443777
Alignment:
Q  118 aaaggcaagattattggtacatgaactattggtaattcttctatctctatcaaaaatgtatggtttgatgatagactgaaatataacctacttaacataa 217  Q
    |||||| | ||||||||||  || ||||||||||||||||||||||| ||||| ||||| ||||||| |||| |||| | | ||||||||||            
T  26443926 aaaggctaaattattggtatgtggactattggtaattcttctatctcaatcaataatgtctggtttggtgatggacttagacataacctact-------- 26443835  T
Q  218 gtcaattttgtcatagtggtgatgaagtgatgtttgataagaacatttgcacagtcatcaa 278  Q
     |||||||| | |||||||| ||||| || ||||||  ||||||||||||||| |||||||    
T  26443834 -tcaattttatgatagtggttatgaaatggtgtttg--aagaacatttgcacattcatcaa 26443777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 140 - 259
Target Start/End: Complemental strand, 22674415 - 22674296
Alignment:
Q  140 gaactattggtaattcttctatctctatcaaaaatgtatggtttgatgatagactgaaatataacctacttaacataagtcaattttgtcatagtggtga 239  Q
    ||||||||| ||| |||||||||||||| || ||||| ||||||| |||| ||||   | ||||||| |||| ||| ||| | |||||| ||||| || |    
T  22674415 gaactattgataactcttctatctctattaataatgtgtggtttgttgatggactttgacataacctgcttagcattagtaagttttgtgatagtagtta 22674316  T
Q  240 tgaagtgatgtttgataaga 259  Q
    ||| ||||||||||||||||    
T  22674315 tgatgtgatgtttgataaga 22674296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 121 - 176
Target Start/End: Original strand, 28704374 - 28704429
Alignment:
Q  121 ggcaagattattggtacatgaactattggtaattcttctatctctatcaaaaatgt 176  Q
    |||||||| ||||||||| |||||||||||||||| ||||||||||| || |||||    
T  28704374 ggcaagatcattggtacaagaactattggtaattcctctatctctattaataatgt 28704429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 24 - 121
Target Start/End: Original strand, 27518805 - 27518902
Alignment:
Q  24 tatgggagaaccaacgcttcagtcatggtacttgaacagtggttactcatgacacatgacaagagaaaagcatattttccaaacattaacactgaaag 121  Q
    |||||||||| ||| | | |||||||||||| |||||||| ||| |||  || ||||||||| |||||||||||| ||||||||  ||||| ||||||    
T  27518805 tatgggagaatcaaagttccagtcatggtacctgaacagtagttgctcccgatacatgacaatagaaaagcatatgttccaaaccctaacattgaaag 27518902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 122 - 176
Target Start/End: Complemental strand, 17718810 - 17718756
Alignment:
Q  122 gcaagattattggtacatgaactattggtaattcttctatctctatcaaaaatgt 176  Q
    ||||||| ||||||||||||| ||||||||| || ||||||||||| || |||||    
T  17718810 gcaagatcattggtacatgaattattggtaactcctctatctctattaataatgt 17718756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0084 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0084
Description:

Target: scaffold0084; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 121 - 176
Target Start/End: Complemental strand, 46248 - 46193
Alignment:
Q  121 ggcaagattattggtacatgaactattggtaattcttctatctctatcaaaaatgt 176  Q
    |||||||||||||||||| ||||||||||||| || ||||||||||| || |||||    
T  46248 ggcaagattattggtacaggaactattggtaactcctctatctctattaataatgt 46193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0183 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0183
Description:

Target: scaffold0183; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 121 - 182
Target Start/End: Complemental strand, 8035 - 7974
Alignment:
Q  121 ggcaagattattggtacatgaactattggtaattcttctatctctatcaaaaatgtatggtt 182  Q
    |||||||| ||||||||| ||||||||||||| || ||||||||||| || ||||| |||||    
T  8035 ggcaagatcattggtacaggaactattggtaactcctctatctctattaataatgtgtggtt 7974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0047 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0047
Description:

Target: scaffold0047; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 121 - 182
Target Start/End: Complemental strand, 6028 - 5967
Alignment:
Q  121 ggcaagattattggtacatgaactattggtaattcttctatctctatcaaaaatgtatggtt 182  Q
    |||||||| ||||||||| ||||||||||||| ||||||||||| || || ||||| |||||    
T  6028 ggcaagatcattggtacaggaactattggtaactcttctatctcaattaataatgtgtggtt 5967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0161 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: scaffold0161
Description:

Target: scaffold0161; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 122 - 182
Target Start/End: Original strand, 13243 - 13303
Alignment:
Q  122 gcaagattattggtacatgaactattggtaattcttctatctctatcaaaaatgtatggtt 182  Q
    ||||||| ||||||||||||||||||||||| || |||||||| || || ||||| |||||    
T  13243 gcaagatcattggtacatgaactattggtaactcctctatctcaattaataatgtgtggtt 13303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0161; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 122 - 182
Target Start/End: Original strand, 17916 - 17976
Alignment:
Q  122 gcaagattattggtacatgaactattggtaattcttctatctctatcaaaaatgtatggtt 182  Q
    ||||||| ||||||||||||||||||||||| || |||||||| || || ||||| |||||    
T  17916 gcaagatcattggtacatgaactattggtaactcctctatctcaattaataatgtgtggtt 17976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0161; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 122 - 181
Target Start/End: Original strand, 20854 - 20913
Alignment:
Q  122 gcaagattattggtacatgaactattggtaattcttctatctctatcaaaaatgtatggt 181  Q
    ||||||| ||||||||||||||||||||||| || |||||||| || || ||||| ||||    
T  20854 gcaagatcattggtacatgaactattggtaactcctctatctcaattaataatgtgtggt 20913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 44 - 93
Target Start/End: Complemental strand, 12349535 - 12349486
Alignment:
Q  44 agtcatggtacttgaacagtggttactcatgacacatgacaagagaaaag 93  Q
    ||||||||||| || ||||||||| |||| ||||||||||| ||||||||    
T  12349535 agtcatggtacctgtacagtggttgctcacgacacatgacaggagaaaag 12349486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 121 - 182
Target Start/End: Original strand, 19071613 - 19071674
Alignment:
Q  121 ggcaagattattggtacatgaactattggtaattcttctatctctatcaaaaatgtatggtt 182  Q
    |||||||| ||||||||| ||||||||||||| || |||||||| || || ||||| |||||    
T  19071613 ggcaagatcattggtacaggaactattggtaactcctctatctcaattaataatgtgtggtt 19071674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 121 - 182
Target Start/End: Complemental strand, 19447014 - 19446953
Alignment:
Q  121 ggcaagattattggtacatgaactattggtaattcttctatctctatcaaaaatgtatggtt 182  Q
    |||||||| ||||||||| ||||||||||||| || |||||||| || || ||||| |||||    
T  19447014 ggcaagatcattggtacaagaactattggtaactcctctatctcaattaataatgtgtggtt 19446953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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