View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19205_high_9 (Length: 258)
Name: NF19205_high_9
Description: NF19205
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19205_high_9 |
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Alignment Details
Target: chr3 (Bit Score: 193; Significance: 1e-105; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 248
Target Start/End: Complemental strand, 1727355 - 1727107
Alignment:
| Q |
1 |
ttagctttaggttttgaactatttagaaccttggactctggaatatttggttttgatttgattagatccttagactctaaagcccttgactttgactcgt |
100 |
Q |
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| T |
1727355 |
ttagctttaggttttgaactattcagaaccttggactctggaatatttggttttgatttgattagatccttagactctaaagcccttgactttgacttgt |
1727256 |
T |
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| Q |
101 |
taagaaccttagc-tttcccgcttttggaacaaagtaggaatacataccattttgtatgaactcagcacaaggaggtttctttgatttctccaaaacctg |
199 |
Q |
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| T |
1727255 |
taagaaccttagcttttccagcttttagaacaaagtaggaatacataccattttgtatgaactcagcataaggaggtttctttgatttctctagaacatg |
1727156 |
T |
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| Q |
200 |
cttcctcttaagaggtgcttctactaagaaactaattcattctcctttg |
248 |
Q |
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| T |
1727155 |
catcctcttaagcggtgcttctactgagaaactaattcattcttctttg |
1727107 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 15669181 - 15669120
Alignment:
| Q |
1 |
ttagctttaggttttgaactatttagaaccttggactctggaatatttggttttgatttgat |
62 |
Q |
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| T |
15669181 |
ttagctttaggttttggactattcagaactttggacattggaatctttggttttgatttgat |
15669120 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 93 - 244
Target Start/End: Original strand, 17234088 - 17234240
Alignment:
| Q |
93 |
tgactcgttaagaaccttagctttccc-gcttttggaacaaagtaggaatacataccattttgtatgaactcagcacaaggaggtttctttgatttctcc |
191 |
Q |
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| T |
17234088 |
tgacttgttcagaaccttagtttttccagcttttggaacaaagtaggaatacatattgttctgtatacactcataacaaggaggtttctttgatttctct |
17234187 |
T |
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| Q |
192 |
aaaacctgcttcctcttaagaggtgcttctactaagaaactaattcattctcc |
244 |
Q |
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| T |
17234188 |
agattttgcatcgtcttaagaggtgcttcttttaagaaaccaattccttctcc |
17234240 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 2 - 84
Target Start/End: Complemental strand, 19220226 - 19220144
Alignment:
| Q |
2 |
tagctttaggttttgaactatttagaaccttggactctggaatatttggttttgatttgattagatccttagactctaaagcc |
84 |
Q |
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| T |
19220226 |
tagctttaggttttgaactcttcagaaccttggactctgaagtatttggttttgatttgttcagaaacttagactctgaagcc |
19220144 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 46 - 188
Target Start/End: Complemental strand, 11451016 - 11450873
Alignment:
| Q |
46 |
tttggttttgatttgattagatccttagactctaaagcccttgactttgactcgttaagaaccttagctttccc-gcttttggaacaaagtaggaataca |
144 |
Q |
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||||||||||||||||| ||| ||||||||||||| | | || | ||||| ||| |||||||||||||| | || ||||||||||||| |||||||| |
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| T |
11451016 |
tttggttttgatttgatcagaaccttagactctaaggtctcagattctgacttgttcagaaccttagctttttcagcctttggaacaaagtgggaataca |
11450917 |
T |
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| Q |
145 |
taccattttgtatgaactcagcacaaggaggtttctttgatttc |
188 |
Q |
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| T |
11450916 |
aacccttttgtatgcactcataacaaggagttttctttgttttc |
11450873 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 46 - 188
Target Start/End: Original strand, 11543719 - 11543862
Alignment:
| Q |
46 |
tttggttttgatttgattagatccttagactctaaagcccttgactttgactcgttaagaaccttagctttccc-gcttttggaacaaagtaggaataca |
144 |
Q |
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||||||||||||||||| ||| ||||||| | ||| | | || | ||||| ||| |||||||||||||| | || ||||||||||||| |||||||| |
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| T |
11543719 |
tttggttttgatttgatcagaaccttagattgtaaggtctcagattctgacttgttcagaaccttagctttttcagcctttggaacaaagtgggaataca |
11543818 |
T |
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| Q |
145 |
taccattttgtatgaactcagcacaaggaggtttctttgatttc |
188 |
Q |
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||| ||||||||| ||||| ||||||||||||||||| |||| |
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| T |
11543819 |
aacccttttgtatgcactcataacaaggaggtttctttgttttc |
11543862 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 160 - 248
Target Start/End: Original strand, 20093884 - 20093972
Alignment:
| Q |
160 |
actcagcacaaggaggtttctttgatttctccaaaacctgcttcctcttaagaggtgcttctactaagaaactaattcattctcctttg |
248 |
Q |
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|||||| |||||||||||||||| |||||| | ||||| | ||| |||||||||| |||| || |||||||||||| |||||||||| |
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| T |
20093884 |
actcagaacaaggaggtttctttcatttctgtagaaccttcatccatttaagaggtgtttcttctgagaaactaattccttctcctttg |
20093972 |
T |
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