View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19205_low_1 (Length: 656)

Name: NF19205_low_1
Description: NF19205
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19205_low_1
NF19205_low_1
[»] chr3 (8 HSPs)
chr3 (8-640)||(25866731-25867358)
chr3 (218-316)||(20192666-20192765)
chr3 (410-482)||(45590733-45590805)
chr3 (244-316)||(40122813-40122885)
chr3 (252-321)||(2201073-2201143)
chr3 (243-311)||(47904128-47904197)
chr3 (257-316)||(3044319-3044379)
chr3 (217-249)||(20874458-20874490)
[»] chr5 (13 HSPs)
chr5 (23-200)||(30218639-30218816)
chr5 (557-641)||(30218491-30218575)
chr5 (246-298)||(29117009-29117061)
chr5 (258-316)||(14295457-14295516)
chr5 (211-266)||(27153468-27153523)
chr5 (246-316)||(28586826-28586897)
chr5 (272-321)||(32059644-32059694)
chr5 (247-299)||(985573-985625)
chr5 (217-249)||(14257345-14257377)
chr5 (256-300)||(15074824-15074868)
chr5 (245-321)||(26209468-26209544)
chr5 (371-399)||(34160764-34160792)
chr5 (213-249)||(39257544-39257580)
[»] chr8 (7 HSPs)
chr8 (213-300)||(12224976-12225063)
chr8 (218-297)||(26479690-26479769)
chr8 (219-297)||(26820112-26820189)
chr8 (258-313)||(33209283-33209339)
chr8 (244-321)||(12361129-12361207)
chr8 (245-294)||(11119082-11119131)
chr8 (218-266)||(29097108-29097156)
[»] chr6 (8 HSPs)
chr6 (245-299)||(33068639-33068693)
chr6 (272-321)||(2027461-2027511)
chr6 (211-249)||(6963214-6963252)
chr6 (371-401)||(27894079-27894109)
chr6 (216-281)||(34404317-34404382)
chr6 (245-316)||(10452420-10452492)
chr6 (246-298)||(24836278-24836330)
chr6 (246-298)||(34429769-34429821)
[»] scaffold0024 (1 HSPs)
scaffold0024 (245-321)||(27514-27591)
[»] chr1 (9 HSPs)
chr1 (249-321)||(49517012-49517085)
chr1 (213-249)||(14737841-14737877)
chr1 (239-321)||(33527202-33527285)
chr1 (211-289)||(3052771-3052849)
chr1 (404-478)||(6659756-6659830)
chr1 (246-300)||(15360833-15360887)
chr1 (211-264)||(29929734-29929787)
chr1 (217-249)||(48146173-48146205)
chr1 (246-321)||(48830131-48830207)
[»] chr4 (6 HSPs)
chr4 (220-284)||(25717415-25717479)
chr4 (441-479)||(39691068-39691106)
chr4 (213-246)||(52645567-52645600)
chr4 (248-300)||(31038944-31038996)
chr4 (218-246)||(34375876-34375904)
chr4 (370-398)||(50400519-50400547)
[»] chr2 (6 HSPs)
chr2 (249-300)||(5511507-5511558)
chr2 (404-479)||(15120259-15120334)
chr2 (404-479)||(15370242-15370317)
chr2 (245-296)||(27288571-27288622)
chr2 (401-479)||(18884940-18885018)
chr2 (245-297)||(10143110-10143162)
[»] chr7 (4 HSPs)
chr7 (353-407)||(1710745-1710799)
chr7 (217-263)||(39711507-39711553)
chr7 (256-296)||(425903-425943)
chr7 (218-250)||(31691269-31691301)


Alignment Details
Target: chr3 (Bit Score: 521; Significance: 0; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 521; E-Value: 0
Query Start/End: Original strand, 8 - 640
Target Start/End: Complemental strand, 25867358 - 25866731
Alignment:
Q  8 gagcagagaatagaaccttggaaatttacagtctcatatgataagctagtaattgcattaggatcacatccttctacttttggaattcaaggagtcaatg 107  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  25867358 gagcagacaatagaaccttggaaatttacagtctcatatgataagctagtaattgcactaggatcacatccttctacttttggaattcaaggagtcaatg 25867259  T
Q  108 aacatgccatttttcttcgcgaagtacatcatgcacaagaaattcgtcggaagttgctcctaaatttgatgctatctgatgttccaggtttgctacaata 207  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  25867258 aacatgccatttttcttcgcgaagtacatcatgcacaggaaattcgtcggaagttgctcctaaatttgatgctatctgatgttccaggtttgctgcaata 25867159  T
Q  208 ttctaggccttgtttggataagcaacttaattaagcacttatgtatacgttatttctataatgcaagataaaataaaatcaaactgttttcattaatcta 307  Q
    |     ||| |||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||    
T  25867158 t-----gccatgtttggataagaaacttaattaagcgcttatgtatacgttatttctataatgcaagataaaataaaatcaaactgttgtcattcatcta 25867064  T
Q  308 taagctgttctcatggctatcccggagaggtaatcgacaatgttttaagcttttcttgagtgtttatgaaaataagctgaaaacagtttatggagctgtt 407  Q
    ||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  25867063 taagctgttttcatggctatcccggagaggtaatctacaatgttttaagcttttcttgagtgcttatgaaaataagctgaaaacagtttatggagctgtt 25866964  T
Q  408 accataagctatcccaaacagccttacaaattattatgctagtagatacgatcaaataagtcaattcaaacaaactctttgtctttgtatggaaaatata 507  Q
    | || |||||||||||||||| |||||||||||||  |||||||||||||||||||||| ||||||| ||||||||||| ||||| ||||||||||||||    
T  25866963 atcacaagctatcccaaacagacttacaaattattgcgctagtagatacgatcaaataactcaattcgaacaaactcttagtcttagtatggaaaatata 25866864  T
Q  508 ttgttaagtcatgacagttacttttctgtacatcaactctgtgttttattttggatacaggaatttctgaagatgagaagcaaaggcttttgcactgtgt 607  Q
    ||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25866863 ttgttaagtcatgacagttacttctctgtacatcaattctgtgttttattttggatacaggaatttctgaagatgagaagcaaaggcttttgcactgtgt 25866764  T
Q  608 tgttgtgggaggtggtcctactggagttgaatt 640  Q
    |||||||||||||||||||||||||||||||||    
T  25866763 tgttgtgggaggtggtcctactggagttgaatt 25866731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 218 - 316
Target Start/End: Complemental strand, 20192765 - 20192666
Alignment:
Q  218 tgtttggataagcaacttaattaagcacttatgtatacgttatttctataatgcaagataaaataaaatcaaactgttttcat-taatctataagctgtt 316  Q
    ||||||||||| || || |||||||  |||||||||| | ||||| |||||   ||||||||||||| |||||| |||||||| ||||||||||||||||    
T  20192765 tgtttggataaacagctcaattaagtgcttatgtataagctatttatataacaaaagataaaataaagtcaaacagttttcatataatctataagctgtt 20192666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 410 - 482
Target Start/End: Original strand, 45590733 - 45590805
Alignment:
Q  410 cataagctatcccaaacagccttacaaattattatgctagtagatacgatcaaataagtcaattcaaacaaac 482  Q
    |||||||| |||||||||| || |||| |  ||||||||||||||| | ||||| ||||||||||||||||||    
T  45590733 cataagctctcccaaacagtctcacaagtgcttatgctagtagataagttcaaaaaagtcaattcaaacaaac 45590805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 244 - 316
Target Start/End: Complemental strand, 40122885 - 40122813
Alignment:
Q  244 acttatgtatacgttatttctataatgcaagataaaataaaatcaaactgttttcattaatctataagctgtt 316  Q
    ||||||||||| | |||||| ||||   ||||||||||||| ||||||||||||||| || ||||||| ||||    
T  40122885 acttatgtataagctatttcaataacaaaagataaaataaagtcaaactgttttcataaagctataagttgtt 40122813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 252 - 321
Target Start/End: Original strand, 2201073 - 2201143
Alignment:
Q  252 atacgttatttctataatgcaagataaaataaaatcaaactgttttcat-taatctataagctgttctcat 321  Q
    ||||| || |||||| ||| ||||||||| ||| ||||||||||||||| ||| |||||||||||| ||||    
T  2201073 atacgctacttctattatgaaagataaaacaaagtcaaactgttttcatataagctataagctgttttcat 2201143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 243 - 311
Target Start/End: Complemental strand, 47904197 - 47904128
Alignment:
Q  243 cacttatgtatacgttatttctataatgcaagataaaataaaatcaaactgttttcat-taatctataag 311  Q
    |||||||| ||| | ||||||||||| |||| ||||||| ||||||| || ||||||| |||||||||||    
T  47904197 cacttatgaataagctatttctataacgcaacataaaatgaaatcaagctattttcatataatctataag 47904128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 257 - 316
Target Start/End: Complemental strand, 3044379 - 3044319
Alignment:
Q  257 ttatttctataatgcaagataaaataaaatcaaactgttttcat-taatctataagctgtt 316  Q
    |||||||||||| | |||| ||||||||| ||| |||||||||| |||||||||| |||||    
T  3044379 ttatttctataacgaaagacaaaataaaaccaatctgttttcatataatctataacctgtt 3044319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 217 - 249
Target Start/End: Complemental strand, 20874490 - 20874458
Alignment:
Q  217 ttgtttggataagcaacttaattaagcacttat 249  Q
    |||||||||||| ||||||||||||||||||||    
T  20874490 ttgtttggataaacaacttaattaagcacttat 20874458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 78; Significance: 5e-36; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 23 - 200
Target Start/End: Complemental strand, 30218816 - 30218639
Alignment:
Q  23 ccttggaaatttacagtctcatatgataagctagtaattgcattaggatcacatccttctacttttggaattcaaggagtcaatgaacatgccatttttc 122  Q
    |||||||| |||||| |||| ||||||||| ||||||||||| ||||| |||| ||  | |||||||||||||| |||||  |||||||||| |||||||    
T  30218816 ccttggaagtttacaatctcctatgataagttagtaattgcactaggagcacaacccaccacttttggaattcatggagtttatgaacatgcaatttttc 30218717  T
Q  123 ttcgcgaagtacatcatgcacaagaaattcgtcggaagttgctcctaaatttgatgctatctgatgttccaggtttgc 200  Q
    |||| |||||  | |||||||| ||||| ||||| ||||||||||| ||||||||| | ||||| |||||||||||||    
T  30218716 ttcgtgaagtttaccatgcacaggaaatccgtcgcaagttgctcctcaatttgatgatgtctgacgttccaggtttgc 30218639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 557 - 641
Target Start/End: Complemental strand, 30218575 - 30218491
Alignment:
Q  557 tttggatacaggaatttctgaagatgagaagcaaaggcttttgcactgtgttgttgtgggaggtggtcctactggagttgaattt 641  Q
    ||||||| |||| ||||| ||||| |||||| ||||||| || |||||||| ||||| |||||||||||||| ||||||||||||    
T  30218575 tttggatgcagggatttcggaagaggagaagaaaaggctgttacactgtgtggttgtcggaggtggtcctacgggagttgaattt 30218491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 246 - 298
Target Start/End: Complemental strand, 29117061 - 29117009
Alignment:
Q  246 ttatgtatacgttatttctataatgcaagataaaataaaatcaaactgttttc 298  Q
    ||||||||| |||||||||||||   ||||||||||||| |||||||||||||    
T  29117061 ttatgtatatgttatttctataacaaaagataaaataaagtcaaactgttttc 29117009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 258 - 316
Target Start/End: Original strand, 14295457 - 14295516
Alignment:
Q  258 tatttctataatgcaagataaaataaaatcaaactgttttcat-taatctataagctgtt 316  Q
    |||||||||||   ||||||||||||| ||||||||||||||| ||| ||||||||||||    
T  14295457 tatttctataacaaaagataaaataaagtcaaactgttttcatataagctataagctgtt 14295516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 211 - 266
Target Start/End: Complemental strand, 27153523 - 27153468
Alignment:
Q  211 taggccttgtttggataagcaacttaattaagcacttatgtatacgttatttctat 266  Q
    |||||||||||||||||| |||||||||| ||  |||||||||| ||| |||||||    
T  27153523 taggccttgtttggataaacaacttaatttagtgcttatgtataagttttttctat 27153468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 246 - 316
Target Start/End: Complemental strand, 28586897 - 28586826
Alignment:
Q  246 ttatgtatacgttatttctataatgcaagataaaataaaatcaaactgttttcat-taatctataagctgtt 316  Q
    ||||||||||  |||||||||||   ||||||||||||| ||||||||||||||| |||  |||||||||||    
T  28586897 ttatgtatacactatttctataacaaaagataaaataaagtcaaactgttttcatataaattataagctgtt 28586826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 272 - 321
Target Start/End: Complemental strand, 32059694 - 32059644
Alignment:
Q  272 aagataaaataaaatcaaactgttttcat-taatctataagctgttctcat 321  Q
    ||||||||||||| ||||||||||||||| ||| |||||||||||| ||||    
T  32059694 aagataaaataaagtcaaactgttttcatataagctataagctgttttcat 32059644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 247 - 299
Target Start/End: Original strand, 985573 - 985625
Alignment:
Q  247 tatgtatacgttatttctataatgcaagataaaataaaatcaaactgttttca 299  Q
    |||||||| |||||||| ||||   ||||||||||||| ||||||||||||||    
T  985573 tatgtatatgttatttccataacaaaagataaaataaagtcaaactgttttca 985625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 217 - 249
Target Start/End: Original strand, 14257345 - 14257377
Alignment:
Q  217 ttgtttggataagcaacttaattaagcacttat 249  Q
    |||||||||||| ||||||||||||||||||||    
T  14257345 ttgtttggataaacaacttaattaagcacttat 14257377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 256 - 300
Target Start/End: Complemental strand, 15074868 - 15074824
Alignment:
Q  256 gttatttctataatgcaagataaaataaaatcaaactgttttcat 300  Q
    ||||||||||||||  |||||| |||| |||||||||||||||||    
T  15074868 gttatttctataataaaagatagaatataatcaaactgttttcat 15074824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 245 - 321
Target Start/End: Complemental strand, 26209544 - 26209468
Alignment:
Q  245 cttatgtatacgttatttctataatgcaagataaaataaaatcaaactgttttca--ttaatctataagctgttctcat 321  Q
    |||||||||| |||||||||||||  |||||||||||||| || || ||||||||   ||| |||||||||||| ||||    
T  26209544 cttatgtataagttatttctataa--caagataaaataaagtccaattgttttcaatataagctataagctgttttcat 26209468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 371 - 399
Target Start/End: Original strand, 34160764 - 34160792
Alignment:
Q  371 ttatgaaaataagctgaaaacagtttatg 399  Q
    |||||||||||||||||||||||||||||    
T  34160764 ttatgaaaataagctgaaaacagtttatg 34160792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 213 - 249
Target Start/End: Complemental strand, 39257580 - 39257544
Alignment:
Q  213 ggccttgtttggataagcaacttaattaagcacttat 249  Q
    |||||||||||||||| |||||||||||||| |||||    
T  39257580 ggccttgtttggataaacaacttaattaagcgcttat 39257544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 213 - 300
Target Start/End: Complemental strand, 12225063 - 12224976
Alignment:
Q  213 ggccttgtttggataagcaacttaattaagcacttatgtatacgttatttctataatgcaagataaaataaaatcaaactgttttcat 300  Q
    |||| ||||||||||| |||||||||||||  |||||||||| ||||||||||  |   ||||||||||||| ||||||| |||||||    
T  12225063 ggccctgtttggataaacaacttaattaagagcttatgtataagttatttctaagacaaaagataaaataaagtcaaactattttcat 12224976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 218 - 297
Target Start/End: Original strand, 26479690 - 26479769
Alignment:
Q  218 tgtttggataagcaacttaattaagcacttatgtatacgttatttctataatgcaagataaaataaaatcaaactgtttt 297  Q
    ||||||||||| || |||||||||  |||| ||||||   || |||||||||  ||||||||||||||||||||||||||    
T  26479690 tgtttggataaacagcttaattaaaaacttttgtataaactagttctataatcaaagataaaataaaatcaaactgtttt 26479769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 219 - 297
Target Start/End: Original strand, 26820112 - 26820189
Alignment:
Q  219 gtttggataagcaacttaattaagcacttatgtatacgttatttctataatgcaagataaaataaaatcaaactgtttt 297  Q
    |||||||||| ||||| |||||||| |||| ||||| |||||||||||||   ||||||||||||| ||||||| ||||    
T  26820112 gtttggataaacaactcaattaagcgctta-gtataagttatttctataacaaaagataaaataaagtcaaactatttt 26820189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 258 - 313
Target Start/End: Complemental strand, 33209339 - 33209283
Alignment:
Q  258 tatttctataatgcaagataaaataaaatcaaactgttttcat-taatctataagct 313  Q
    ||||||||||||| ||||||||||||| || |||||||||||| ||| |||||||||    
T  33209339 tatttctataatgaaagataaaataaagtcgaactgttttcatataaactataagct 33209283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 244 - 321
Target Start/End: Original strand, 12361129 - 12361207
Alignment:
Q  244 acttatgtatacgttatttctataatgcaagataaaataaaatcaaactgttttcat-taatctataagctgttctcat 321  Q
    |||||| |||| |||||||||||||   |||||||||| || ||||| ||||||||| ||| |||||||||||| ||||    
T  12361129 acttatatataagttatttctataaataaagataaaatgaagtcaaattgttttcatataagctataagctgttttcat 12361207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 245 - 294
Target Start/End: Complemental strand, 11119131 - 11119082
Alignment:
Q  245 cttatgtatacgttatttctataatgcaagataaaataaaatcaaactgt 294  Q
    |||||||||||| |||||||||||   ||||||||||||| |||||||||    
T  11119131 cttatgtatacgatatttctataacaaaagataaaataaagtcaaactgt 11119082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 218 - 266
Target Start/End: Original strand, 29097108 - 29097156
Alignment:
Q  218 tgtttggataagcaacttaattaagcacttatgtatacgttatttctat 266  Q
    ||||||||||| ||||||||||| | ||||||||||| | |||||||||    
T  29097108 tgtttggataaacaacttaattatgaacttatgtataagctatttctat 29097156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 245 - 299
Target Start/End: Complemental strand, 33068693 - 33068639
Alignment:
Q  245 cttatgtatacgttatttctataatgcaagataaaataaaatcaaactgttttca 299  Q
    |||||||||| |||||||||||||   |||||||||||| |||||||||||||||    
T  33068693 cttatgtataagttatttctataacaaaagataaaataatatcaaactgttttca 33068639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 272 - 321
Target Start/End: Complemental strand, 2027511 - 2027461
Alignment:
Q  272 aagataaaataaaatcaaactgttttcat-taatctataagctgttctcat 321  Q
    ||||||||||||| ||||||| ||||||| ||| |||||||||||||||||    
T  2027511 aagataaaataaagtcaaactattttcatataacctataagctgttctcat 2027461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 211 - 249
Target Start/End: Complemental strand, 6963252 - 6963214
Alignment:
Q  211 taggccttgtttggataagcaacttaattaagcacttat 249  Q
    |||||||||||||||||| ||||| ||||||||||||||    
T  6963252 taggccttgtttggataaacaactaaattaagcacttat 6963214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 371 - 401
Target Start/End: Original strand, 27894079 - 27894109
Alignment:
Q  371 ttatgaaaataagctgaaaacagtttatgga 401  Q
    |||||||||||||||||||||||||||||||    
T  27894079 ttatgaaaataagctgaaaacagtttatgga 27894109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 216 - 281
Target Start/End: Original strand, 34404317 - 34404382
Alignment:
Q  216 cttgtttggataagcaacttaattaagcacttatgtatacgttatttctataatgcaagataaaat 281  Q
    ||||||||||||| |||||||||||||  |||||||||   ||||||||||||  | |||||||||    
T  34404317 cttgtttggataaacaacttaattaagtgcttatgtatgacttatttctataagacgagataaaat 34404382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 245 - 316
Target Start/End: Complemental strand, 10452492 - 10452420
Alignment:
Q  245 cttatgtatacgttatttctataatgcaagataaaataaaatcaaactgttttcat-taatctataagctgtt 316  Q
    |||||||||| | |||||||||||   || |||||||||||||||||| ||||||| ||| ||||||| ||||    
T  10452492 cttatgtataagctatttctataacaaaatataaaataaaatcaaactattttcatataagctataagttgtt 10452420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 246 - 298
Target Start/End: Complemental strand, 24836330 - 24836278
Alignment:
Q  246 ttatgtatacgttatttctataatgcaagataaaataaaatcaaactgttttc 298  Q
    ||||||||| |||||||||||||   ||||||||||||| ||||| |||||||    
T  24836330 ttatgtataagttatttctataacaaaagataaaataaagtcaaattgttttc 24836278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 246 - 298
Target Start/End: Complemental strand, 34429821 - 34429769
Alignment:
Q  246 ttatgtatacgttatttctataatgcaagataaaataaaatcaaactgttttc 298  Q
    ||||||||| ||||||||||||||   |||||||||||| || ||||||||||    
T  34429821 ttatgtataagttatttctataataagagataaaataaagtctaactgttttc 34429769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 245 - 321
Target Start/End: Original strand, 27514 - 27591
Alignment:
Q  245 cttatgtatacgttatttctataatgcaagataaaataaaatcaaactgttttcat-taatctataagctgttctcat 321  Q
    |||||||||| |||||||||||||   ||||||||||||| ||||| ||||||||| ||| ||||||| |||| ||||    
T  27514 cttatgtataagttatttctataacagaagataaaataaagtcaaattgttttcatataaactataagttgttttcat 27591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.000000001; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 249 - 321
Target Start/End: Original strand, 49517012 - 49517085
Alignment:
Q  249 tgtatacgttatttctataatgcaagataaaataaaatcaaactgttttca-ttaatctataagctgttctcat 321  Q
    |||||| |||||||||||||   ||||||||||||| ||||| |||||||| |||| |||||||||||| ||||    
T  49517012 tgtataagttatttctataacaaaagataaaataaagtcaaattgttttcatttaagctataagctgttttcat 49517085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 213 - 249
Target Start/End: Complemental strand, 14737877 - 14737841
Alignment:
Q  213 ggccttgtttggataagcaacttaattaagcacttat 249  Q
    ||||||||||||||||||| |||||||||||||||||    
T  14737877 ggccttgtttggataagcagcttaattaagcacttat 14737841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 239 - 321
Target Start/End: Complemental strand, 33527285 - 33527202
Alignment:
Q  239 taagcacttatgtatacgttatttctataatgcaagataaaataaaatcaaactgttttcat-taatctataagctgttctcat 321  Q
    ||||| |||||| ||| | |||||||| ||   ||||||||||| | ||||||||||||||| |||||||||||||||| ||||    
T  33527285 taagcgcttatgaataagctatttctaaaacaaaagataaaatacagtcaaactgttttcatataatctataagctgttttcat 33527202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 211 - 289
Target Start/End: Complemental strand, 3052849 - 3052771
Alignment:
Q  211 taggccttgtttggataagcaacttaattaagcacttatgtatacgttatttctataatgcaagataaaataaaatcaa 289  Q
    |||||| | |||| |||| || ||||||||||| ||||||| || | |||||||||||   ||||||||||||||||||    
T  3052849 taggccctctttgtataaacagcttaattaagcgcttatgtgtaagctatttctataactaaagataaaataaaatcaa 3052771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 404 - 478
Target Start/End: Original strand, 6659756 - 6659830
Alignment:
Q  404 tgttaccataagctatcccaaacagccttacaaattattatgctagtagatacgatcaaataagtcaattcaaac 478  Q
    ||||| |||||||||||||||| || || |||| |  ||||||||||||||| | | |||||||||||| |||||    
T  6659756 tgttatcataagctatcccaaatagtctcacaagtgcttatgctagtagataagctaaaataagtcaatccaaac 6659830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 246 - 300
Target Start/End: Original strand, 15360833 - 15360887
Alignment:
Q  246 ttatgtatacgttatttctataatgcaagataaaataaaatcaaactgttttcat 300  Q
    ||||||||  |||||||||||||   ||||||||||||| |||||||||||||||    
T  15360833 ttatgtattagttatttctataacaaaagataaaataaagtcaaactgttttcat 15360887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 211 - 264
Target Start/End: Complemental strand, 29929787 - 29929734
Alignment:
Q  211 taggccttgtttggataagcaacttaattaagcacttatgtatacgttatttct 264  Q
    |||||| ||||||||||| |||||| ||||||  ||||||||||| ||||||||    
T  29929787 taggccctgtttggataaacaacttgattaagtccttatgtatactttatttct 29929734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 217 - 249
Target Start/End: Complemental strand, 48146205 - 48146173
Alignment:
Q  217 ttgtttggataagcaacttaattaagcacttat 249  Q
    |||||||||||| ||||||||||||||||||||    
T  48146205 ttgtttggataaacaacttaattaagcacttat 48146173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 246 - 321
Target Start/End: Complemental strand, 48830207 - 48830131
Alignment:
Q  246 ttatgtatacgttatttctataatgcaagataaaataaaatcaaactgttttcat-taatctataagctgttctcat 321  Q
    ||||||||| ||||||||||| |   ||||||||||||| ||||||| ||||||| ||| |||||| ||||| ||||    
T  48830207 ttatgtataagttatttctattaccaaagataaaataaagtcaaactattttcatataagctataaactgttttcat 48830131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000004; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 220 - 284
Target Start/End: Original strand, 25717415 - 25717479
Alignment:
Q  220 tttggataagcaacttaattaagcacttatgtatacgttatttctataatgcaagataaaataaa 284  Q
    |||| |||| |||||| ||||||  |||||||||| |||||||||| |||| |||||||||||||    
T  25717415 tttgaataaacaactttattaagtgcttatgtataagttatttctagaatgaaagataaaataaa 25717479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 441 - 479
Target Start/End: Complemental strand, 39691106 - 39691068
Alignment:
Q  441 ttatgctagtagatacgatcaaataagtcaattcaaaca 479  Q
    ||||||||||||||| | |||||||||||||||||||||    
T  39691106 ttatgctagtagataagctcaaataagtcaattcaaaca 39691068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 213 - 246
Target Start/End: Original strand, 52645567 - 52645600
Alignment:
Q  213 ggccttgtttggataagcaacttaattaagcact 246  Q
    |||||||||||||||| |||||||||||||||||    
T  52645567 ggccttgtttggataaacaacttaattaagcact 52645600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 248 - 300
Target Start/End: Complemental strand, 31038996 - 31038944
Alignment:
Q  248 atgtatacgttatttctataatgcaagataaaataaaatcaaactgttttcat 300  Q
    |||||||||||||||||| |||   |||||||||||| ||||| |||||||||    
T  31038996 atgtatacgttatttctacaataatagataaaataaagtcaaattgttttcat 31038944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 218 - 246
Target Start/End: Complemental strand, 34375904 - 34375876
Alignment:
Q  218 tgtttggataagcaacttaattaagcact 246  Q
    |||||||||||||||||||||||||||||    
T  34375904 tgtttggataagcaacttaattaagcact 34375876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 370 - 398
Target Start/End: Original strand, 50400519 - 50400547
Alignment:
Q  370 tttatgaaaataagctgaaaacagtttat 398  Q
    |||||||||||||||||||||||||||||    
T  50400519 tttatgaaaataagctgaaaacagtttat 50400547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 249 - 300
Target Start/End: Original strand, 5511507 - 5511558
Alignment:
Q  249 tgtatacgttatttctataatgcaagataaaataaaatcaaactgttttcat 300  Q
    |||||| ||||||||||||||| || |||||||||| ||||||| |||||||    
T  5511507 tgtataagttatttctataatgaaatataaaataaagtcaaacttttttcat 5511558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 404 - 479
Target Start/End: Original strand, 15120259 - 15120334
Alignment:
Q  404 tgttaccataagctatcccaaacagccttacaaattattatgctagtagatacgatcaaataagtcaattcaaaca 479  Q
    |||| ||||||||| ||||||||||  | |||| |  ||||||||||||||| | |||||||||||||| ||||||    
T  15120259 tgtttccataagctctcccaaacagattcacaactgtttatgctagtagataagttcaaataagtcaatccaaaca 15120334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 404 - 479
Target Start/End: Complemental strand, 15370317 - 15370242
Alignment:
Q  404 tgttaccataagctatcccaaacagccttacaaattattatgctagtagatacgatcaaataagtcaattcaaaca 479  Q
    |||||||||||  | |||||||||| || ||||||  |||||| |||||||| | |||||||||||||| ||||||    
T  15370317 tgttaccataaaatgtcccaaacagtctcacaaatgcttatgccagtagataagctcaaataagtcaatccaaaca 15370242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 245 - 296
Target Start/End: Original strand, 27288571 - 27288622
Alignment:
Q  245 cttatgtatacgttatttctataatgcaagataaaataaaatcaaactgttt 296  Q
    |||||||| | ||| ||||||||||  |||||||||||||||||||||||||    
T  27288571 cttatgtaaaagttgtttctataataaaagataaaataaaatcaaactgttt 27288622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 401 - 479
Target Start/End: Original strand, 18884940 - 18885018
Alignment:
Q  401 agctgttaccataagctatcccaaacagccttacaaattattatgctagtagatacgatcaaataagtcaattcaaaca 479  Q
    ||||||| | ||||||| |||||||||||||||||| || |||||  | |||||||| || |||||||| || ||||||    
T  18884940 agctgtttctataagctctcccaaacagccttacaagttcttatgtcaatagatacgctcgaataagtcgatccaaaca 18885018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 245 - 297
Target Start/End: Original strand, 10143110 - 10143162
Alignment:
Q  245 cttatgtatacgttatttctataatgcaagataaaataaaatcaaactgtttt 297  Q
    |||||||||| |||||||||||||   |||||||||| || ||||||||||||    
T  10143110 cttatgtataagttatttctataacaaaagataaaattaagtcaaactgtttt 10143162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000006; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 353 - 407
Target Start/End: Original strand, 1710745 - 1710799
Alignment:
Q  353 taagcttttcttgagtgtttatgaaaataagctgaaaacagtttatggagctgtt 407  Q
    |||||| |||| ||| | ||||| |||||||||||||||||||||||||| ||||    
T  1710745 taagctattctagagaggttatggaaataagctgaaaacagtttatggagatgtt 1710799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 217 - 263
Target Start/End: Complemental strand, 39711553 - 39711507
Alignment:
Q  217 ttgtttggataagcaacttaattaagcacttatgtatacgttatttc 263  Q
    |||||| ||||| |||||||||||||| |||||||||| ||||||||    
T  39711553 ttgtttcgataaacaacttaattaagcgcttatgtataagttatttc 39711507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 256 - 296
Target Start/End: Complemental strand, 425943 - 425903
Alignment:
Q  256 gttatttctataatgcaagataaaataaaatcaaactgttt 296  Q
    |||| ||||||||| |||||||||||||| |||||||||||    
T  425943 gttaattctataatacaagataaaataaagtcaaactgttt 425903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 218 - 250
Target Start/End: Complemental strand, 31691301 - 31691269
Alignment:
Q  218 tgtttggataagcaacttaattaagcacttatg 250  Q
    ||||||||||| |||||||||||||||||||||    
T  31691301 tgtttggataaacaacttaattaagcacttatg 31691269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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