View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19205_low_2 (Length: 551)
Name: NF19205_low_2
Description: NF19205
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19205_low_2 |
 | |
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| [»] scaffold0171 (3 HSPs) |
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| [»] scaffold0181 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 461; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 461; E-Value: 0
Query Start/End: Original strand, 19 - 536
Target Start/End: Complemental strand, 25168773 - 25168256
Alignment:
| Q |
19 |
atatcaagtaaatccctaacatgatgagcaccttcacctcttttcttcttttcctcttgatgctcctttgtcaccctatccatcattgtgtcaaacctat |
118 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25168773 |
atatcaagtaaatccctaacatgatgagcaccttcacctcttttcttcttttcctcttgatgctcctttgtcaccctatccatcattgtgtcaaacctat |
25168674 |
T |
|
| Q |
119 |
cccgaatccttttcagctttttattcattccgtgaaaatctatattcttaaaaaaccagataaaatccgacacattcaccttccctacaagctctgcggt |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25168673 |
cccgaatccttttcagctttttattcattccataaaaatctatattcttaaaaaaccagataaaatccgacacattcaccttccctacaagctctgcggt |
25168574 |
T |
|
| Q |
219 |
ctctgtcaccatcttcctaatctctttaacatcgctaatatcattctcagaactgaaagnnnnnnncattgtcatcattgttataatgctattggtgaga |
318 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||| |||||||||||||||||||||||| |
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|
| T |
25168573 |
ctctgtcaccatcttcctaatctctttaacatcgctaatatcattctcagaaccgaaagtttttttcattgtcattattgttataatgctattggtgaga |
25168474 |
T |
|
| Q |
319 |
gtcaatagctcgcccccaacttcaacggcttcaccggtttcccctttcttctgcaaaagtctaagaaaccttagagtctcttgttgcctcaagggacgga |
418 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
25168473 |
gtcaatagctcgcccccaacttcaatggcttcaccggtttcccctttcttctgcaaaagtctaagaaaccttagagtctcttgttgcctcaagggacgga |
25168374 |
T |
|
| Q |
419 |
gttgatcaagcgttcttacaccaagaagctccgacatgcatatcttcttcatgaactgccaataatcaccgtaaggcgtaattatgaaaccttttaagcc |
518 |
Q |
| |
|
|||||||||||||| |||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
25168373 |
gttgatcaagcgttattacaccaagaagctctgacatgcatatcttcttcacgaactgccaataatcaccgtaaggcgtaattatgaaaccttttaatcc |
25168274 |
T |
|
| Q |
519 |
atatgatatgtaggtagt |
536 |
Q |
| |
|
|||||||||||||||||| |
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|
| T |
25168273 |
atatgatatgtaggtagt |
25168256 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 16 - 531
Target Start/End: Complemental strand, 24940157 - 24939642
Alignment:
| Q |
16 |
aatatatcaagtaaatccctaacatgatgagcaccttcacctcttttcttcttttcctcttgatgctcctttgtcaccctatccatcattgtgtcaaacc |
115 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||| || ||||||||| ||||||||| |
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|
| T |
24940157 |
aatatatcaagtagatccctaacatgatgagcaccttcacctcttttcttcttttcctctagatgctcttttgtcactctctccatcattttgtcaaacc |
24940058 |
T |
|
| Q |
116 |
tatcccgaatccttttcagctttttattcattccgtgaaaatctatattcttaaaaaaccagataaaatccgacacattcaccttccctacaagctctgc |
215 |
Q |
| |
|
| |||| ||| ||||| ||| ||||||||||||| | |||||| | ||||||| ||||||| ||||||||||||||||| | ||||||| ||||||| || |
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|
| T |
24940057 |
tgtccctaattcttttaagccttttattcattccataaaaatccaaattcttacaaaaccaaataaaatccgacacattaaacttccctgcaagctcggc |
24939958 |
T |
|
| Q |
216 |
ggtctctgtcaccatcttcctaatctctttaacatcgctaatatcattctcagaactgaaagnnnnnnncattgtcatcattgttataatgctattggtg |
315 |
Q |
| |
|
|| |||||||||||||||| ||| || ||||| || | ||||||||||| ||||| |||| |||||||||| |||||||||||||||||| |
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| T |
24939957 |
agtgtctgtcaccatcttccgaatgtccttaacttcacaaatatcattcttagaaccaaaagtttttctcattgtcatccttgttataatgctattggat |
24939858 |
T |
|
| Q |
316 |
agagtcaatagctcgcccccaacttcaacggcttcaccggtttcccctttcttctgcaaaagtctaagaaaccttagagtctcttgttgcctcaagggac |
415 |
Q |
| |
|
|||||||| |||||||| |||| |||||||||||||||| |||||||||||| | ||||||||||||||| |||||||||||||||||||||||||||| |
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|
| T |
24939857 |
agagtcaacagctcgccgccaatatcaacggcttcaccggcttcccctttcttatccaaaagtctaagaaatcttagagtctcttgttgcctcaagggac |
24939758 |
T |
|
| Q |
416 |
ggagttgatcaagcgttcttacaccaagaagctccgacatgcatatcttcttcatgaactgccaataatcaccgtaaggcgtaattatgaaaccttttaa |
515 |
Q |
| |
|
| |||||||| || |||||| ||||||||||||| ||||||||||||||||||| || | ||| || ||||| ||||| |||||||| ||||| ||| | |
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|
| T |
24939757 |
gaagttgatcgagggttcttccaccaagaagctctgacatgcatatcttcttcacaaatttccagtagtcaccataaggtgtaattattaaaccctttga |
24939658 |
T |
|
| Q |
516 |
gccatatgatatgtag |
531 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
24939657 |
gccatatgatatgtag |
24939642 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 393 - 487
Target Start/End: Original strand, 38808988 - 38809083
Alignment:
| Q |
393 |
agtctcttgttgcctcaagggacggagttgatcaagcgttcttacaccaagaagctccgacatgcata-tcttcttcatgaactgccaataatcac |
487 |
Q |
| |
|
||||||||| |||||||||| || || ||||||||| |||||| ||||||||||||| |||||||||| | || |||||||||| |||||| |||| |
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|
| T |
38808988 |
agtctcttgctgcctcaaggaacagaattgatcaagagttcttccaccaagaagctctgacatgcatattttttttcatgaacttccaatagtcac |
38809083 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 68 - 112
Target Start/End: Original strand, 38808675 - 38808719
Alignment:
| Q |
68 |
tttcctcttgatgctcctttgtcaccctatccatcattgtgtcaa |
112 |
Q |
| |
|
||||||||||||||||| || ||||||| |||||||||||||||| |
|
|
| T |
38808675 |
tttcctcttgatgctcccttatcaccctctccatcattgtgtcaa |
38808719 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0171 (Bit Score: 91; Significance: 8e-44; HSPs: 3)
Name: scaffold0171
Description:
Target: scaffold0171; HSP #1
Raw Score: 91; E-Value: 8e-44
Query Start/End: Original strand, 289 - 531
Target Start/End: Complemental strand, 10785 - 10543
Alignment:
| Q |
289 |
gtcatcattgttataatgctattggtgagagtcaatagctcgcccccaacttcaacggcttcaccggtttcccctttcttctgcaaaagtctaagaaacc |
388 |
Q |
| |
|
|||||| ||||||| || ||||| |||||| |||| ||| ||| | || ||||| ||||| |||| ||||||||||||||||| |||||||||||||| |
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|
| T |
10785 |
gtcatccttgttatgattctattcgtgagattcaagagcaagccactgacatcaacagcttcgccggcttcccctttcttctgcagaagtctaagaaacc |
10686 |
T |
|
| Q |
389 |
ttagagtctcttgttgcctcaagggacggagttgatcaagcgttcttacaccaagaagctccgacatgcatatcttcttcatgaactgccaataatcacc |
488 |
Q |
| |
|
| ||||||||||||||||| ||||||| |||||||| |||||| ||||||||||||| |||||||||||||| |||||||||| |||||| ||||| |
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|
| T |
10685 |
gcacggtctcttgttgcctcaacggacggaattgatcaatagttcttccaccaagaagctctgacatgcatatctttttcatgaacttccaatattcacc |
10586 |
T |
|
| Q |
489 |
gtaaggcgtaattatgaaaccttttaagccatatgatatgtag |
531 |
Q |
| |
|
||||||| || |||||| | | | |||||||||||| |||| |
|
|
| T |
10585 |
ataaggcgcaaacatgaaatcctgtgagccatatgataagtag |
10543 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0171; HSP #2
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 334 - 494
Target Start/End: Complemental strand, 24290 - 24130
Alignment:
| Q |
334 |
ccaacttcaacggcttcaccggtttcccctttcttctgcaaaagtctaagaaaccttagagtctcttgttgcctcaagggacggagttgatcaagcgttc |
433 |
Q |
| |
|
||||| ||||| || |||||||||||||| ||||||| ||||| |||||| ||| | |||||||||||||||||| ||||| | ||||||||| |||| |
|
|
| T |
24290 |
ccaacatcaaccgcctcaccggtttccccattcttcttcaaaacattaagaagcctcaaagtctcttgttgcctcaatggacgaaattgatcaagagttc |
24191 |
T |
|
| Q |
434 |
ttacaccaagaagctccgacatgcatatcttcttcatgaactgccaataatcaccgtaagg |
494 |
Q |
| |
|
|| ||||||||||||| |||||||||||||| |||||||||| ||| || ||||| ||||| |
|
|
| T |
24190 |
ttccaccaagaagctcggacatgcatatctttttcatgaacttccagtagtcaccataagg |
24130 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0171; HSP #3
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 58 - 523
Target Start/End: Complemental strand, 19151 - 18692
Alignment:
| Q |
58 |
cttttcttcttttcctcttgatgctcctttgtcaccctatccatcattgtgtcaaacctatcccgaatccttttcagctttttattcattccgtgaaaat |
157 |
Q |
| |
|
||||||||| ||||| ||||||||||| || ||||||| ||||||| |||||||||||| ||| || | ||| ||| |||| || | ||| || | || |
|
|
| T |
19151 |
cttttcttcatttccacttgatgctcccttatcaccctctccatcaatgtgtcaaacctctccataaccactttaagccttttgttaaatccttgcatat |
19052 |
T |
|
| Q |
158 |
ctatattcttaaaaaaccagataaaatccgacacattcaccttccctacaagctctgcggtctctgtcaccatcttcctaatctctttaacatcgctaat |
257 |
Q |
| |
|
| ||||||||||||||| ||||||||||||| ||| | | ||||| ||||||| | | ||| ||||||||||||||| |||| ||||||| | |
|
|
| T |
19051 |
cccaattcttaaaaaaccaaataaaatccgacaaattaaacctccctgaaagctctacactatcttgcaccatcttcctaatgtcttccacatcgc---t |
18955 |
T |
|
| Q |
258 |
atcattctcagaactgaaagnnnnnnncattgtcatcattgttataatgctattggtgagagtcaatagctcgcccccaacttcaacggcttcaccggtt |
357 |
Q |
| |
|
||| || |||| || | | ||||| ||| |||| || || ||||| |||||| |||| |||||||| ||||| | ||| || || | | | |
|
|
| T |
18954 |
atcgttttcagcac---atgttttactcattgccatagttgtgatgattctattcgtgagattcaagagctcgccgccaacattaacagcctcgcgagct |
18858 |
T |
|
| Q |
358 |
tcccctttcttctgcaaaagtctaagaaaccttagagtctcttgttgcctcaagggacggagttgatcaagcgttcttacaccaagaagctccgacatgc |
457 |
Q |
| |
|
|||||||| |||||||||||||||||||||| | ||| |||| ||||||||| ||| | | | || || ||||| | ||||||||||| ||||| | |
|
|
| T |
18857 |
tccccttttgtctgcaaaagtctaagaaacctcatagtttctttttgcctcaaaggaagaaacttgtcgagggttctgccgccaagaagctcagacatac |
18758 |
T |
|
| Q |
458 |
atatcttcttcatgaactgccaataatcaccgtaaggcgtaattatgaaaccttttaagccatatg |
523 |
Q |
| |
|
||||||| || ||||||| ||| || ||||| ||||||| || ||||||| | ||| ||||||||| |
|
|
| T |
18757 |
atatcttttttatgaacttccagtattcaccataaggcgcaaatatgaaatcctttgagccatatg |
18692 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0181 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: scaffold0181
Description:
Target: scaffold0181; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 300 - 488
Target Start/End: Original strand, 11389 - 11577
Alignment:
| Q |
300 |
tataatgctattggtgagagtcaatagctcgcccccaacttcaacggcttcaccggtttcccctttcttctgcaaaagtctaagaaaccttagagtctct |
399 |
Q |
| |
|
||||||| ||||||||||||| || |||||||| || || |||||||| | || | ||| ||| |||||||||||||| | | || || | | |||| |
|
|
| T |
11389 |
tataatgttattggtgagagttaagagctcgccgccgacatcaacggcgttgccagcttctcctatcttctgcaaaagttttaagaatctcaatgactct |
11488 |
T |
|
| Q |
400 |
tgttgcctcaagggacggagttgatcaagcgttcttacaccaagaagctccgacatgcatatcttcttcatgaactgccaataatcacc |
488 |
Q |
| |
|
|||||| |||| ||| ||| ||||||||| |||||| |||||||||||| |||||||| | |||||| | |||| |||||| ||||| |
|
|
| T |
11489 |
tgttgcatcaatggaaggaattgatcaagtgttcttttaccaagaagctctgacatgcacaacttcttaacaaacttccaatagtcacc |
11577 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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