View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19205_low_3 (Length: 510)
Name: NF19205_low_3
Description: NF19205
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19205_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 453; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 453; E-Value: 0
Query Start/End: Original strand, 6 - 494
Target Start/End: Complemental strand, 14742232 - 14741745
Alignment:
| Q |
6 |
agaagcaaaggctgggagaatgctccgactggatctaagaagccgctgcaacgtgctcataagcaaatgagtaaaaagcttgctctagaagccacttatg |
105 |
Q |
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| T |
14742232 |
agaaacaaaggcagggagaatgctccgactggatctaagaagccgctgcaacgtgctcataagcaaatgagtaataagcttgctctagaagccacttatg |
14742133 |
T |
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| Q |
106 |
caaacaagactagagaattaagtactgaggttggttcatcatttttattttgcaaagttgtgtttaaatttaatatttgtatggttatcataagaaatat |
205 |
Q |
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| T |
14742132 |
caaacaagactagagaattaagtactgaggttggttcatcatttttattttgcaaagttgtgttcaaatttaatatt-gtatggttatcataagaaatat |
14742034 |
T |
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| Q |
206 |
atcagaagattaacttatgcatttaatttttgttgcttcagctgtccaatgttgagacggctttgagaagtctcaaaacaacaatgattgcacagtgcag |
305 |
Q |
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| T |
14742033 |
atcagaagattaacttatgcatttaatttttgttgcttcagctgtccaatgttgagacggctttgagaagtctcaaaacaacaatgattgcacagtgcag |
14741934 |
T |
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| Q |
306 |
gttcgtgaaagaatcacccattattttcatttttgtagtctcatgttcaaattgccaaaatagtgctacatggtaggagtttaatagattttgatatcat |
405 |
Q |
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| T |
14741933 |
gttcgtgaaagaatcacccattattttcatttttgtagtctcatgttcaaattgccaaaatagtgctacatggtaggagtttaatagattttgatatcat |
14741834 |
T |
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| Q |
406 |
cgacacgcttacgctctcatggatctgaatcatctgatcaagatcgaataacctactattcaatgttatattttatagcaccaactttg |
494 |
Q |
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| T |
14741833 |
cgacacgcttatgctctcatggatctgaattatctgatcaagatcgaataacttactattcaatgttatattttatagcaccaactttg |
14741745 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 63 - 354
Target Start/End: Complemental strand, 14735200 - 14734910
Alignment:
| Q |
63 |
cataagcaaatgagtaaaaagcttgctctagaagccacttatgcaaacaagactagagaattaagtactgaggttggttcatcatttttattttgcaaag |
162 |
Q |
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| T |
14735200 |
cataagcaattgagtaaaaagcttgctctagaagccacttatgcaaacaagactagagaattaagtactgaggttggttcatcatttttgttttgcagag |
14735101 |
T |
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| Q |
163 |
ttgtgtttaaatttaatatttgtatggttatcataagaaatatatcagaagattaacttatgcatttaatttttgttgcttcagctgtccaatgttgaga |
262 |
Q |
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| T |
14735100 |
ttgtgtttaaattttatatt-gtatggttatcataagaaatatatcagaagattaacttatgcatttaatttttgttgctctacttgtccaagattgata |
14735002 |
T |
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| Q |
263 |
cggctttgagaagtctcaaaacaacaatgattgcacagtgcaggttcgtgaaagaatcacccattattttcatttttgtagtctcatgttca |
354 |
Q |
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| T |
14735001 |
cggctttgagaagtctcaaaacaacggtcattgcacagtacaggttcgtcaaagaatcacccattattttcatttttgtggtctcatgttca |
14734910 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 227 - 322
Target Start/End: Original strand, 14998525 - 14998620
Alignment:
| Q |
227 |
tttaatttttgttgcttcagctgtccaatgttgagacggctttgagaagtctcaaaacaacaatgattgcacagtgcaggttcgtgaaagaatcac |
322 |
Q |
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| T |
14998525 |
tttaacttttgttgttccagctgtctaagattgatatggctttgacaagtctcaaaacaaaagcaattgcaaagtgcaggtttgtgaaaaaatcac |
14998620 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 54; Significance: 9e-22; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 77 - 307
Target Start/End: Original strand, 29467226 - 29467453
Alignment:
| Q |
77 |
taaaaagcttgctctagaagccacttatgcaaacaagactagagaattaagtactgaggttggttcatcatttttattttgcaaagttgtgtttaaatt- |
175 |
Q |
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| T |
29467226 |
taaaaggcttgctcaagaagcaacttatgccaatatgactagggaattaagcactgaggttggttcattatttttttt---cagagctgtgtttaaaatc |
29467322 |
T |
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| Q |
176 |
taatatttgtatggttatcataagaaatatatcagaagattaacttatgcatttaatttttgttgcttcagctgtccaatgttgagacggctttgagaag |
275 |
Q |
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| T |
29467323 |
taatgat-gtatgttacttggaagaagtatttcagacggttaatttgtgcatttaacttttgttgttccagctgtctaaggttgatatggctttgagaag |
29467421 |
T |
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| Q |
276 |
tctcaaaacaacaatgattgcacagtgcaggt |
307 |
Q |
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| T |
29467422 |
tctcaaaacaacagcgatttcacagtgcaggt |
29467453 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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