View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19205_low_5 (Length: 498)
Name: NF19205_low_5
Description: NF19205
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19205_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 404; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 16 - 494
Target Start/End: Complemental strand, 38391269 - 38390775
Alignment:
| Q |
16 |
atgcgggaaatctaacagaggtaccagggatctgatatacaagcatcaagtaatctgcctcagcatgatggtacttaaatccagcctacaaaataaagaa |
115 |
Q |
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| T |
38391269 |
atgcgggaaatctaacagaggtaccagggatctgatatacaagcatcaagtaatctgcctcagcatgatggtacttaaatccagcctacaaaataaagaa |
38391170 |
T |
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| Q |
116 |
aataatatgaaaaaagaatcgttaggattcacattcagacactttctaagctatatgctgcagtgaaatatatatcagagacgactcatataaccaaatc |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
38391169 |
aataatatgaaaaaagaatcgttaggattcacattcagacactttctaagctatatgctgcagtgaaatatatatcagagacaactcatataaccaaatc |
38391070 |
T |
|
| Q |
216 |
acataagtggtttcttttaacttatgaagcacggacatagacacaaacaaagacactagttaccaatacatataattacattcgaacaattcattttatc |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||| |
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| T |
38391069 |
acataagtggtttcttttaacttatgaagcacggacatagacacaaacaaagacactagttaacaatacatataattacaatcgaacaattcattttatc |
38390970 |
T |
|
| Q |
316 |
aaaatat---cacctgtgttgaggtgttgtg-------------taagcagtaaagtnnnnnnntgcacataccttgacagcagaatcaacaagatttga |
399 |
Q |
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| T |
38390969 |
aaaatatcaccacctgtgttgaggtgttgtgtaagtgcttcatttaagcagtaaagtaaaaaaatgcacataccttgacagcagaatcaacaagatttga |
38390870 |
T |
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| Q |
400 |
atgaagaatgggtaaattgatccatattcccttctttccgtgcttgttccaatgggaaatagaatcttgcagtttagaagcaaaggaagaagaat |
494 |
Q |
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| T |
38390869 |
atgaagaatgggtaaattgatccatattcccttctttccgtgcttgttccaatgggaaatagaatcttgcagtttagaagcaaaggaagaagaat |
38390775 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 50 - 108
Target Start/End: Complemental strand, 37357744 - 37357686
Alignment:
| Q |
50 |
atatacaagcatcaagtaatctgcctcagcatgatggtacttaaatccagcctacaaaa |
108 |
Q |
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||||||||||||||||| ||||| |||||||||||||| || ||||||||||| |||| |
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| T |
37357744 |
atatacaagcatcaagtgatctggttcagcatgatggtatttgaatccagcctataaaa |
37357686 |
T |
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