View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19206_high_10 (Length: 425)
Name: NF19206_high_10
Description: NF19206
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19206_high_10 |
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Alignment Details
Target: chr6 (Bit Score: 315; Significance: 1e-177; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 1 - 407
Target Start/End: Complemental strand, 865907 - 865501
Alignment:
| Q |
1 |
tggagagtgatatcacgaacggtgacattggaaacacaggctttggtgttctcttttcccagacttccgatactaattccatgaccaggtccacaattaa |
100 |
Q |
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|||||||| | ||| ||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||| |
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| T |
865907 |
tggagagtaacatcgcgaacggtgacattggaaacacaagctttggtgttctcttttccgagacttccgatactaattccatgacctggtccacaattaa |
865808 |
T |
|
| Q |
101 |
cattgtgcaccaatatattggaacatccagtttgtatagatacacaatcatctcctacatgatgaagaaatgatacatcatgaaatgtgttcaattcaat |
200 |
Q |
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| T |
865807 |
cattgtgcaccaatatgttagaacaaccagtttgtatagacacacaatcatcccctacatgatgaaaaagtgatgcattatgaaatgtgttcaattcaat |
865708 |
T |
|
| Q |
201 |
tcttctaggaaactcatacacattttgtgaaattcttaccacaactaagtgtgctactatagatgagcacatcttgagaattttgtaggtgaattccatc |
300 |
Q |
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|||||||| |||||||| || |||||||||||||||||||||||||||||||||| | | | |||| ||||||||||||||||||||||||||||||||| |
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| T |
865707 |
tcttctagaaaactcattcaaattttgtgaaattcttaccacaactaagtgtgctgccagatatgaccacatcttgagaattttgtaggtgaattccatc |
865608 |
T |
|
| Q |
301 |
tgtgttaggactatcaccaggtgatgaagttgttatatcaaagacttgaacatttgtgcatgaatcaaatttgagatgggtttgttgactgttttgaatg |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
865607 |
tgtgttaggactatcaccaggtgatgaagttgttatatcaaagacttgaacatttgtgcatgaatcaaatttgagatgggtttgttgactgttttgaatg |
865508 |
T |
|
| Q |
401 |
gttatac |
407 |
Q |
| |
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||||||| |
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| T |
865507 |
gttatac |
865501 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 34 - 156
Target Start/End: Complemental strand, 14738647 - 14738525
Alignment:
| Q |
34 |
acacaggctttggtgttctcttttcccagacttccgatactaattccatgaccaggtccacaattaacattgtgcaccaatatattggaacatccagttt |
133 |
Q |
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| T |
14738647 |
acacaggctctggtgttatcttttcctaaacttccaatgctgattccatgtcccggaccacagttgacattgtgtacatatacatttgagcatccagttt |
14738548 |
T |
|
| Q |
134 |
gtatagatacacaatcatctcct |
156 |
Q |
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||||||| | |||||||||||| |
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| T |
14738547 |
gtatagaaatgcaatcatctcct |
14738525 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 64 - 104
Target Start/End: Complemental strand, 42844364 - 42844324
Alignment:
| Q |
64 |
cttccgatactaattccatgaccaggtccacaattaacatt |
104 |
Q |
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| T |
42844364 |
cttccgacactaattccatgaccaggtccacaattcacatt |
42844324 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 268 - 328
Target Start/End: Complemental strand, 14737791 - 14737731
Alignment:
| Q |
268 |
cacatcttgagaattttgtaggtgaattccatctgtgttaggactatcaccaggtgatgaa |
328 |
Q |
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| T |
14737791 |
cacatctttggaattctgaaggtgaattccatcggtattagggctatcaccaggagatgaa |
14737731 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 34 - 156
Target Start/End: Original strand, 27296026 - 27296148
Alignment:
| Q |
34 |
acacaggctttggtgttctcttttcccagacttccgatactaattccatgaccaggtccacaattaacattgtgcaccaatatattggaacatccagttt |
133 |
Q |
| |
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||||||||| | || || || ||||| |||| |||||| || |||||||| || |||||||| | |||||||| || ||| ||| || |||||||||| |
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| T |
27296026 |
acacaggctctagtattatcctttcctagacctccgatgctgattccatgccctggtccacagtcgacattgtgtacgtatacatttgagcatccagttt |
27296125 |
T |
|
| Q |
134 |
gtatagatacacaatcatctcct |
156 |
Q |
| |
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||||||| | ||||||||||||| |
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| T |
27296126 |
gtatagaaatacaatcatctcct |
27296148 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 284 - 327
Target Start/End: Original strand, 27296288 - 27296331
Alignment:
| Q |
284 |
tgtaggtgaattccatctgtgttaggactatcaccaggtgatga |
327 |
Q |
| |
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|||| |||||||||||| |||||||||||||||||||| ||||| |
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| T |
27296288 |
tgtaagtgaattccatcagtgttaggactatcaccaggagatga |
27296331 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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