View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19206_high_11 (Length: 397)
Name: NF19206_high_11
Description: NF19206
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19206_high_11 |
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Alignment Details
Target: chr7 (Bit Score: 312; Significance: 1e-176; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 1 - 380
Target Start/End: Original strand, 24543447 - 24543826
Alignment:
| Q |
1 |
taaatggttggataatcatgaaaaaaggtcagtggtttatgttgcatttggaagtgaagtaacattaagtgatgaagaattcactgggattggtaaggga |
100 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||| | ||| ||| |
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| T |
24543447 |
taaatggttggataaacatgaaaaaaggtcagtggtttatgttgcatttggaagtgaagtaatattaagtgatgaagaattcactgagatagctaaagga |
24543546 |
T |
|
| Q |
101 |
ttagagttatcaagttttccttatctttggattctgaagaaccaagttaaagatgattggcttgttgagaatcaatcaaataagaaaggattgatttgga |
200 |
Q |
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| T |
24543547 |
ttagaactatctagttttccttatctttggattctgaagaaccaagttaaagatgattggcttgttgagaatcaatcaaataagaaaggattgatttgga |
24543646 |
T |
|
| Q |
201 |
gtaattgggcaccacagttgagaatcttatcacatgagtctattgggggatttttgactcattgtggttggagttcagtcatagagagtcttcaagttgg |
300 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||| |||| |||||||||||||||||||| |
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| T |
24543647 |
gtaattgggcaccacagttgagaatcttagcacatgagtctattgggagatttttgactcattgtggttggagtacagtgatagagagtcttcaagttgg |
24543746 |
T |
|
| Q |
301 |
atgtccacttattatgttacctttccataatgagcaaagtttagttgctacacatatggaagaaagaatggtaggggtaa |
380 |
Q |
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| T |
24543747 |
atgtccacttattatgttacctttccataatgagcaaagtttagttgctagactcatggaagaaagaatggtgggggtaa |
24543826 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 1 - 381
Target Start/End: Complemental strand, 24530436 - 24530056
Alignment:
| Q |
1 |
taaatggttggataatcatgaaaaaaggtcagtggtttatgttgcatttggaagtgaagtaacattaagtgatgaagaattcactgggattggtaaggga |
100 |
Q |
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|
||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||| | ||| ||| |
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| T |
24530436 |
taaatggttggataaacatgaaaaatggtcagtggtttatgttgcatttggaagtgaagtaatattaagtgatgaagaattcactgagatagctaaagga |
24530337 |
T |
|
| Q |
101 |
ttagagttatcaagttttccttatctttggattctgaagaaccaagttaaagatgattggcttgttgagaatcaatcaaataagaaaggattgatttgga |
200 |
Q |
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||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24530336 |
ttagaactatctagttttccttatctttggattctgaagaaccaagttaaagatgattggcttgttgagaatcaatcaaataagaaaggattgatttgga |
24530237 |
T |
|
| Q |
201 |
gtaattgggcaccacagttgagaatcttatcacatgagtctattgggggatttttgactcattgtggttggagttcagtcatagagagtcttcaagttgg |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
24530236 |
gtaattgggcaccacagttgagaatcttatcacatgagtctattgggggatttttgactcattgtggttggagttcagtgatagagagtcttcaagttgg |
24530137 |
T |
|
| Q |
301 |
atgtccacttattatgttacctttccataatgagcaaagtttagttgctacacatatggaagaaagaatggtaggggtaaa |
381 |
Q |
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||||||||||||||||||||||||| ||| ||||||| |||| ||||| || | ||||||||| |||||| |||||||| |
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| T |
24530136 |
atgtccacttattatgttacctttcaatagtgagcaagatttaaatgctatacctttggaagaaaaaatggtgggggtaaa |
24530056 |
T |
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