View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19206_high_14 (Length: 348)
Name: NF19206_high_14
Description: NF19206
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19206_high_14 |
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Alignment Details
Target: chr5 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 16 - 341
Target Start/End: Complemental strand, 6582725 - 6582392
Alignment:
| Q |
16 |
atactttcccttttgaattgattttggaaaatacattacaagttagaagttgggttgtttcgatgcatgcagaatttgacgcattgacaggaagcaagat |
115 |
Q |
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| T |
6582725 |
atactttcccttttgaattgattttggaaaatacattacaagttagaagttgggttgtttcgatgcatgcagaatttgacgcattgacaggaagcaagat |
6582626 |
T |
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| Q |
116 |
ttctgctcttgacattggtgcacctgttgtccgcatggcatatagtcctacaagtgctcatactgtagttgcaatcctccaggttggacacacctgaaat |
215 |
Q |
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| T |
6582625 |
ttctgctcttgacattggtgcacctgttgtccgcatggcatatagtcctacaagtgctcatactgtggttgcaatcctccaggttggacacacctgaaat |
6582526 |
T |
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| Q |
216 |
tctctttggtgtatatttga--------nnnnnnngttatatatacgatggggctagataagactaatattccggttacgtcgaagtgaaacaataacta |
307 |
Q |
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| T |
6582525 |
tctctttggtgtatatttgaatttttgttttttttgttatttatacgatggggctagataagactaatattccggttacgtcggagtgaaacaataacta |
6582426 |
T |
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| Q |
308 |
gtttatggttatcttgcagtgactcgaacctatg |
341 |
Q |
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| T |
6582425 |
gtttatggttatcttgcagtgactcgaacctatg |
6582392 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 65 - 202
Target Start/End: Original strand, 34237258 - 34237395
Alignment:
| Q |
65 |
ttgggttgtttcgatgcatgcagaatttgacgcattgacaggaagcaagatttctgctcttgacattggtgcacctgttgtccgcatggcatatagtcct |
164 |
Q |
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| T |
34237258 |
ttggtttgtttccatgcatgcagaatttgatgcattaactggaagcaagatttccgctcttgacattggcgcgcctgctgttcgaatggcgtacagtcca |
34237357 |
T |
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| Q |
165 |
acaagtgctcatactgtagttgcaatcctccaggttgg |
202 |
Q |
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| T |
34237358 |
acaagtggacacactgtgattgcaatcctccaggttgg |
34237395 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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