View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19206_high_16 (Length: 299)
Name: NF19206_high_16
Description: NF19206
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19206_high_16 |
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Alignment Details
Target: chr2 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 18 - 289
Target Start/End: Original strand, 8003898 - 8004163
Alignment:
| Q |
18 |
acatgagacatgagaaaatctattttagtgtgttcgtctgattggttctatcatgatgacaaaatatatattttttaaaa-atcaactttatctaaatat |
116 |
Q |
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| T |
8003898 |
acatgagacatgagaaaatctattttagtgtgttcgtctgattggttctatcatga---caaaatatattttttttaaaaaatcaactttatctaaatat |
8003994 |
T |
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| Q |
117 |
aagtttaggtaaaatgatttatatttccgcgtgttcaactatgtggaacattaaatgtagatataaaaattatgcttgaaatcaaaaccagcacaacaac |
216 |
Q |
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| T |
8003995 |
aagtttaggtaaaatgatttatatttccgcgtgttcaactatgtagaacattaaatgtagatataaaaattatgcttgaaatcaaaactagc---acaac |
8004091 |
T |
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| Q |
217 |
aacaagtgtatttacttgttgagagtgagaggnnnnnnntgcagagagggaaaatagtttttcatagtctgtg |
289 |
Q |
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| T |
8004092 |
aacaagtgtatttacttgttgagagtgagagg-aaaaaatgcagagaggaaaaatagtttctcatggtctgtg |
8004163 |
T |
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