View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19206_high_4 (Length: 538)
Name: NF19206_high_4
Description: NF19206
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19206_high_4 |
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Alignment Details
Target: chr7 (Bit Score: 468; Significance: 0; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 468; E-Value: 0
Query Start/End: Original strand, 17 - 530
Target Start/End: Complemental strand, 38822458 - 38821940
Alignment:
| Q |
17 |
aggttcaatggattagtgaaaattaccaaatgattgagattggtaatagaattcaatgtatgttgatcacatactctgctgaatgctataagccaaggat |
116 |
Q |
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| T |
38822458 |
aggttcaatggattagtgaaaattaccaaatgattgagattggtaatagaattcaatgtatgttgatcacatactctgctcaatgctataagccaaggat |
38822359 |
T |
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| Q |
117 |
taattttttgtttggattattattatt---cataaagaaaatcacctagttggtatatatttctaacgacacagactatgaggtcagaaggatcatgcat |
213 |
Q |
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| T |
38822358 |
taattttt-gtttggattattattattattcataaagaaaatcacctagttggtatatatttctaacgacacagactatgaggtcagaaggatcatgcat |
38822260 |
T |
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| Q |
214 |
ccagaggttatttggatatagaaaaaagaattatttgtcctaccagtgccacttgtttgtctaaactgatggtccgtttagtcaagtactaacgataaga |
313 |
Q |
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| T |
38822259 |
ccagaggttatttggatatagaaaaaagaattatttgtcctaccagtgccacttgtttgtctaaactgatggtccgtttagtcaagtactaacgataaga |
38822160 |
T |
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| Q |
314 |
ttattaattgattaaaggaccaagacattataatacaatctta---ttatatgaaattcatcacatggttgatagtatcttcaggtaggaaggtgaaaca |
410 |
Q |
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| T |
38822159 |
ttattaattgattaaaggaccaagacattataatacaatcttattattatatgaaattcatcacgtggttgatagtatcttcaggtaggaaggtgaaaca |
38822060 |
T |
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| Q |
411 |
ttgaacttcaacagtttatccatattgtcttacgtcatggttcttagatactgaaatagaactttggtggcttttttaattttgaaatctttgttattga |
510 |
Q |
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| T |
38822059 |
ttgaacttcaacagtttatccatattgtcttacgtcatggttcttagatactgaaatagaactttggtggctttttaaattttgcaatctttgttattga |
38821960 |
T |
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| Q |
511 |
tgtcaattggaatattcttc |
530 |
Q |
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| T |
38821959 |
tgtcaattggaatattcttc |
38821940 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 121 - 213
Target Start/End: Complemental strand, 38809363 - 38809270
Alignment:
| Q |
121 |
tttttgtttggattattattattcataaagaaaatcacc-tagttggtatatatttctaacgacacagactatgaggtcagaaggatcatgcat |
213 |
Q |
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| T |
38809363 |
tttttgtttggattattattattcataaagaaaatcaccctagttggtatatagttctaacgagacagattatgaggtcagaaggatcatgcat |
38809270 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 128 - 165
Target Start/End: Complemental strand, 38811491 - 38811454
Alignment:
| Q |
128 |
ttggattattattattcataaagaaaatcacctagttg |
165 |
Q |
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| T |
38811491 |
ttggattattattattcataaagaaaatcacctagttg |
38811454 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 223 - 287
Target Start/End: Complemental strand, 38809213 - 38809150
Alignment:
| Q |
223 |
atttggatatagaaaaaagaattatttgtcctaccagtgccacttgtttgtctaaactgatggtc |
287 |
Q |
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| T |
38809213 |
atttggatatagaaaaat-aaccatttgtcctaccggtgccacttgtttgtctaaactaatggtc |
38809150 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 46 - 89
Target Start/End: Complemental strand, 38809453 - 38809410
Alignment:
| Q |
46 |
atgattgagattggtaatagaattcaatgtatgttgatcacata |
89 |
Q |
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| T |
38809453 |
atgattgagattggttatagaattcaatgtatgtggatcacata |
38809410 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 476 - 528
Target Start/End: Original strand, 35521716 - 35521768
Alignment:
| Q |
476 |
ggtggcttttttaattttgaaatctttgttattgatgtcaattggaatattct |
528 |
Q |
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| T |
35521716 |
ggtgtcttttttgattttgaaatatttgctatcaatgtcaattggaatattct |
35521768 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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