View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19206_low_13 (Length: 364)
Name: NF19206_low_13
Description: NF19206
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19206_low_13 |
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Alignment Details
Target: chr2 (Bit Score: 313; Significance: 1e-176; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 14 - 354
Target Start/End: Original strand, 43578271 - 43578611
Alignment:
| Q |
14 |
cttttttctattctcacccatcgcccatttctatcttctttctctctcaaacacactttcaaccgtgccactcttcccttcactaccaccaccatcaaca |
113 |
Q |
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| T |
43578271 |
cttttttctattctcacccatcgcccatttctatcttctttctctctcaaacacactttcaaccgtgccactcttcccttcactaccaccaccatcaaca |
43578370 |
T |
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| Q |
114 |
acactttatctcaaacacccacttcccaaaacaacactgaatcaaccactcaccccatcaagctttcaaccaaagccagaagaaaagctgctcaagaatc |
213 |
Q |
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| T |
43578371 |
acactttatctcaaacacccacttcccaaaacaacactgaatcaaccactcaccccatcaagctttcaaccaaagccagaagaaaagctgctcaagaatc |
43578470 |
T |
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| Q |
214 |
ccccgttggaattttacnnnnnnnnctcaacaactgttctaaaaccagtgatgttctacaagcactaaacctctacgacgaagcgcgaaaagcgcatgtt |
313 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
43578471 |
ccccgttggaattttacaaaaaaaactcaacaactgttctaaaaccagtgatgttctacaagcactaaacctctacgatgaagcgcgaaaagcgcatgtt |
43578570 |
T |
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| Q |
314 |
cccctcaatcttgatcattataataaactcttgtacctatg |
354 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |
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| T |
43578571 |
cccctcaatcttgatcattataataaactcttgtacctatg |
43578611 |
T |
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