View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19206_low_17 (Length: 306)
Name: NF19206_low_17
Description: NF19206
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19206_low_17 |
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Alignment Details
Target: chr6 (Bit Score: 258; Significance: 1e-144; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 12 - 288
Target Start/End: Complemental strand, 31042341 - 31042062
Alignment:
| Q |
12 |
atgaaccagcatgacatatatagtgtgacaagaatgcctatcatgaaaattaataatgaagatgcactggtgtagaaattcagcaaggatggaaaatata |
111 |
Q |
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| T |
31042341 |
atgaaccagcatgacatatatagtgtgacaagaatgcctatcatgcaaattaataatgaagatgcactggtgtagaaattcagcaaggatggaaaatata |
31042242 |
T |
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| Q |
112 |
aagtttggttggcctatagtccctcatagattcatcactatcaagctgtcagtactgcgacgttttggtggaggatgactggcattgttttctcagatta |
211 |
Q |
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| T |
31042241 |
aagtttggttggcctatagtccctcatagattcatcactatcaagctgtcagtactgcgacgttttgatggaggatgactggcattgttttctcagatta |
31042142 |
T |
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| Q |
212 |
tggcattatggaaagcttctttctcatgaagctgaatgtatagca---ttatggcaagcattagaatggttgactgacat |
288 |
Q |
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| T |
31042141 |
tggcattatggaaagcttctttctcatgaagctgaatgtatagcattattatggcaagcattagaatggttgactgacat |
31042062 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 21 - 130
Target Start/End: Complemental strand, 31069264 - 31069154
Alignment:
| Q |
21 |
catgacatatatagtgtgacaa-gaatgcctatcatgaaaattaataatgaagatgcactggtgtagaaattcagcaaggatggaaaatataaagtttgg |
119 |
Q |
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| T |
31069264 |
catgacatatatagagtgaaaaagaacacctattatgcatattaataatgaagatgcactggtgtagaaattgagcaaggatgaaatatatacagttcgg |
31069165 |
T |
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| Q |
120 |
ttggcctatag |
130 |
Q |
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| T |
31069164 |
tcggcctatag |
31069154 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 71 - 130
Target Start/End: Complemental strand, 31055380 - 31055321
Alignment:
| Q |
71 |
agatgcactggtgtagaaattcagcaaggatggaaaatataaagtttggttggcctatag |
130 |
Q |
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| T |
31055380 |
agatggactggtgtagaaatccagcaaggatagaaaatatacagctcggtcggcctatag |
31055321 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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