View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19206_low_19 (Length: 271)
Name: NF19206_low_19
Description: NF19206
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19206_low_19 |
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Alignment Details
Target: chr3 (Bit Score: 229; Significance: 1e-126; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 10 - 252
Target Start/End: Original strand, 50307200 - 50307439
Alignment:
| Q |
10 |
acatcatcaaagactccaaaacaaggtactactaagaagagtagttcaaagaatcttgctacaaaaagtagtactaataatgaagaaacaacagaaacaa |
109 |
Q |
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| T |
50307200 |
acatcatcaaagactccaaaacaaggtactactaagaagagtagttcaaagaatcttgctacaaaaagtagtactaat---gaagaaacaacagaaacaa |
50307296 |
T |
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| Q |
110 |
tcaatgttgttgaaactaagacagaaccaaaagttaaagaagctatcacaaacaatgataatgctggggaagtagaagaaattgagaatattcaagaaca |
209 |
Q |
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| T |
50307297 |
tcaatgttgttgaaactaagacagaaccaaaagttaaagaagctatcacaaacaatgataatgctggggaagtagaagaaattgagaatattcaagaaca |
50307396 |
T |
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| Q |
210 |
tgatcaagttgaaagtgtgcatgagattaatcaacctcatgat |
252 |
Q |
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| T |
50307397 |
tgatcaagttgaaagtgtgcatgagattaatcaacctcatgat |
50307439 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 172 - 243
Target Start/End: Original strand, 50307605 - 50307676
Alignment:
| Q |
172 |
gctggggaagtagaagaaattgagaatattcaagaacatgatcaagttgaaagtgtgcatgagattaatcaa |
243 |
Q |
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| T |
50307605 |
gctggggaagtagaaaaaattgagaatattctagaacgtgatcaagttgaaaatgtacctgagattaatcaa |
50307676 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 174 - 223
Target Start/End: Original strand, 50307688 - 50307737
Alignment:
| Q |
174 |
tggggaagtagaagaaattgagaatattcaagaacatgatcaagttgaaa |
223 |
Q |
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| T |
50307688 |
tggggaagtagaaaaaattgagaatattcaagaacatgatcaagttgaaa |
50307737 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 177 - 243
Target Start/End: Original strand, 50307448 - 50307514
Alignment:
| Q |
177 |
ggaagtagaagaaattgagaatattcaagaacatgatcaagttgaaagtgtgcatgagattaatcaa |
243 |
Q |
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| T |
50307448 |
ggaagtagaaaaaattgagaatattcaagaacgtgatcaagttgaaaatatacctgagattaatcaa |
50307514 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 177 - 243
Target Start/End: Original strand, 50307529 - 50307595
Alignment:
| Q |
177 |
ggaagtagaagaaattgagaatattcaagaacatgatcaagttgaaagtgtgcatgagattaatcaa |
243 |
Q |
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| T |
50307529 |
ggaagtagaaaaaattgagaatattcaagaacgcgatcaagttgataatgtacctgagattaatcaa |
50307595 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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