View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19206_low_2 (Length: 612)
Name: NF19206_low_2
Description: NF19206
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19206_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 302; Significance: 1e-169; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 302; E-Value: 1e-169
Query Start/End: Original strand, 11 - 352
Target Start/End: Original strand, 258915 - 259265
Alignment:
| Q |
11 |
cagagaaatacccatcaattatgttcttggtaattgatgtggatgaactaactgtaagtagtgaagggatacatacatgttattgctatt------atca |
104 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||| |
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| T |
258915 |
cagagaaatacccatcaattatgttcttggtaattgatgtggatgaactaactgtaagtagtgaagggatacatacatgttattgttattgttattatca |
259014 |
T |
|
| Q |
105 |
ttgttattgt---tgttgttgttatgtaaccagacatggttttgtatattgcaggatttcagcacatcctgggacattaaagccacaccaactttcttct |
201 |
Q |
| |
|
|||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
259015 |
ttgttattgttgttgttgttgttatgtaaccagacgtggttttgtatattgcaggatttcagcacatcctgggacattaaagccacaccaactttcttct |
259114 |
T |
|
| Q |
202 |
ttcttagagatggacaagagattgacaaactggtaggagccaacaaaccagagctggagaagaagattgctgcagttaatttagttccccattatcaata |
301 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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|
| T |
259115 |
ttcttagagatggacaagagattgacaaactggtaggagccaacaaaccagagctggagaagaagattgctgcagttaatttagttccccgttatcaata |
259214 |
T |
|
| Q |
302 |
gcgattattgtattatccataatttgtaaaaccaatgttcaacccttgggg |
352 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
259215 |
gcgattattgtattatccataatttgtaaaaccaatgttcaacccttgggg |
259265 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 302; E-Value: 1e-169
Query Start/End: Original strand, 11 - 352
Target Start/End: Complemental strand, 657006 - 656656
Alignment:
| Q |
11 |
cagagaaatacccatcaattatgttcttggtaattgatgtggatgaactaactgtaagtagtgaagggatacatacatgttattgctatt------atca |
104 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||| |
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|
| T |
657006 |
cagagaaatacccatcaattatgttcttggtaattgatgtggatgaactaactgtaagtagtgaagggatacatacatgttattgttattgttattatca |
656907 |
T |
|
| Q |
105 |
ttgttattgttgttgttgtt---atgtaaccagacatggttttgtatattgcaggatttcagcacatcctgggacattaaagccacaccaactttcttct |
201 |
Q |
| |
|
|||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
656906 |
ttgttattgttgttgttgttgttatgtaaccagacgtggttttgtatattgcaggatttcagcacatcctgggacattaaagccacaccaactttcttct |
656807 |
T |
|
| Q |
202 |
ttcttagagatggacaagagattgacaaactggtaggagccaacaaaccagagctggagaagaagattgctgcagttaatttagttccccattatcaata |
301 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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|
| T |
656806 |
ttcttagagatggacaagagattgacaaactggtaggagccaacaaaccagagctggagaagaagattgctgcagttaatttagttccccgttatcaata |
656707 |
T |
|
| Q |
302 |
gcgattattgtattatccataatttgtaaaaccaatgttcaacccttgggg |
352 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
656706 |
gcgattattgtattatccataatttgtaaaaccaatgttcaacccttgggg |
656656 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 302; E-Value: 1e-169
Query Start/End: Original strand, 11 - 352
Target Start/End: Complemental strand, 842741 - 842391
Alignment:
| Q |
11 |
cagagaaatacccatcaattatgttcttggtaattgatgtggatgaactaactgtaagtagtgaagggatacatacatgttattgctatt------atca |
104 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||| |
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|
| T |
842741 |
cagagaaatacccatcaattatgttcttggtaattgatgtggatgaactaactgtaagtagtgaagggatacatacatgttattgttattgttattatca |
842642 |
T |
|
| Q |
105 |
ttgttattgttgttgttgtt---atgtaaccagacatggttttgtatattgcaggatttcagcacatcctgggacattaaagccacaccaactttcttct |
201 |
Q |
| |
|
|||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
842641 |
ttgttattgttgttgttgttgttatgtaaccagacgtggttttgtatattgcaggatttcagcacatcctgggacattaaagccacaccaactttcttct |
842542 |
T |
|
| Q |
202 |
ttcttagagatggacaagagattgacaaactggtaggagccaacaaaccagagctggagaagaagattgctgcagttaatttagttccccattatcaata |
301 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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|
| T |
842541 |
ttcttagagatggacaagagattgacaaactggtaggagccaacaaaccagagctggagaagaagattgctgcagttaatttagttccccgttatcaata |
842442 |
T |
|
| Q |
302 |
gcgattattgtattatccataatttgtaaaaccaatgttcaacccttgggg |
352 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
842441 |
gcgattattgtattatccataatttgtaaaaccaatgttcaacccttgggg |
842391 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 171; E-Value: 2e-91
Query Start/End: Original strand, 388 - 596
Target Start/End: Original strand, 259301 - 259507
Alignment:
| Q |
388 |
ccctgcaactttaatttgtcactgtattttaatttgtaagtaaatattcaattgatatcattgtagttnnnnnnnnnnngtttatttctgacatataaag |
487 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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|
| T |
259301 |
ccctgcaactttaatttgtcactgtattttaatttgtaagtaaatattcaattgatatcattgtagttaaaaaaaaa--gtttatttctgacatataaag |
259398 |
T |
|
| Q |
488 |
aattgttgagccctattcagatcgaggagagtaagagagcattttatcctattatttggatttgtgtttgagaagtgagattaaattactctaaacgtgc |
587 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
259399 |
aattgttgagccctattcagatcgaggagagtaagagagcattttatcctattatttggatttgtgtttgagaagtgagattaaattactctaaacgtgc |
259498 |
T |
|
| Q |
588 |
tttagtgat |
596 |
Q |
| |
|
||||||||| |
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|
| T |
259499 |
tttagtgat |
259507 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 171; E-Value: 2e-91
Query Start/End: Original strand, 388 - 596
Target Start/End: Complemental strand, 656620 - 656414
Alignment:
| Q |
388 |
ccctgcaactttaatttgtcactgtattttaatttgtaagtaaatattcaattgatatcattgtagttnnnnnnnnnnngtttatttctgacatataaag |
487 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
656620 |
ccctgcaactttaatttgtcactgtattttaatttgtaagtaaatattcaattgatatcattgtagttaaaaaaaaa--gtttatttctgacatataaag |
656523 |
T |
|
| Q |
488 |
aattgttgagccctattcagatcgaggagagtaagagagcattttatcctattatttggatttgtgtttgagaagtgagattaaattactctaaacgtgc |
587 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
656522 |
aattgttgagccctattcagatcgaggagagtaagagagcattttatcctattatttggatttgtgtttgagaagtgagattaaattactctaaacgtgc |
656423 |
T |
|
| Q |
588 |
tttagtgat |
596 |
Q |
| |
|
||||||||| |
|
|
| T |
656422 |
tttagtgat |
656414 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 171; E-Value: 2e-91
Query Start/End: Original strand, 388 - 596
Target Start/End: Complemental strand, 842355 - 842149
Alignment:
| Q |
388 |
ccctgcaactttaatttgtcactgtattttaatttgtaagtaaatattcaattgatatcattgtagttnnnnnnnnnnngtttatttctgacatataaag |
487 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
842355 |
ccctgcaactttaatttgtcactgtattttaatttgtaagtaaatattcaattgatatcattgtagttaaaaaaaaa--gtttatttctgacatataaag |
842258 |
T |
|
| Q |
488 |
aattgttgagccctattcagatcgaggagagtaagagagcattttatcctattatttggatttgtgtttgagaagtgagattaaattactctaaacgtgc |
587 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
842257 |
aattgttgagccctattcagatcgaggagagtaagagagcattttatcctattatttggatttgtgtttgagaagtgagattaaattactctaaacgtgc |
842158 |
T |
|
| Q |
588 |
tttagtgat |
596 |
Q |
| |
|
||||||||| |
|
|
| T |
842157 |
tttagtgat |
842149 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 76; Significance: 8e-35; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 135 - 266
Target Start/End: Complemental strand, 27547129 - 27546998
Alignment:
| Q |
135 |
acatggttttgtatattgcaggatttcagcacatcctgggacattaaagccacaccaactttcttctttcttagagatggacaagagattgacaaactgg |
234 |
Q |
| |
|
|||||||| ||||| |||||||| |||||||| || |||||||| |||||||||||||||||||||||||||| |||||||||| | |||||||||| | |
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|
| T |
27547129 |
acatggttgtgtatgttgcaggacttcagcacttcatgggacatcaaagccacaccaactttcttctttcttaaagatggacaacaacttgacaaacttg |
27547030 |
T |
|
| Q |
235 |
taggagccaacaaaccagagctggagaagaag |
266 |
Q |
| |
|
| ||||||||||| |||||||| ||||||||| |
|
|
| T |
27547029 |
ttggagccaacaagccagagcttgagaagaag |
27546998 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 44 - 76
Target Start/End: Complemental strand, 27547816 - 27547784
Alignment:
| Q |
44 |
ttgatgtggatgaactaactgtaagtagtgaag |
76 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
27547816 |
ttgatgtggatgaactaactgtaagtagtgaag |
27547784 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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