View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19206_low_3 (Length: 584)
Name: NF19206_low_3
Description: NF19206
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19206_low_3 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 414; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 414; E-Value: 0
Query Start/End: Original strand, 159 - 584
Target Start/End: Original strand, 5997859 - 5998284
Alignment:
| Q |
159 |
aaatttggtattctctgtcttttcttgtcgatggttgcccttagtgttacggtgttccagaactgaagaggcacattggactcactgaagaaaattcttt |
258 |
Q |
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| T |
5997859 |
aaatttggtattctctgtcttttctcgtcgatggttgcccttagtgttacggtgttccagaactgaaggggcacattggactcactgaagaaaattcttt |
5997958 |
T |
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| Q |
259 |
ccttgtttatggccccccttagtgttatgttgttccagatactagtaagttctcatcaatctcactagctttctttatcactcattcgtccaacatttgt |
358 |
Q |
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| T |
5997959 |
ccttgtttatggccccccttagtgttatgttgttccagatactagtaagttctcatcaatttcactagctttctttatcactcattcgtccaacatttgt |
5998058 |
T |
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| Q |
359 |
tgtttatcaatatatgcacttcaaaatctcactttactttgtttgatttgagtgtgctagtttgtgaatttgtaacaatgcctgctcaactatgattcct |
458 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5998059 |
tgtttatcaatatatgcacttcaaaatctcactttactttgtttgatttgagtgtgctagtttgtgaatttgtaacaatgcctgctcaactatgattcct |
5998158 |
T |
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| Q |
459 |
acctttttggttattgatcctattcccattcaacttgtcttaaattttggttttgacgatgtactttgttttcatgataatttgctttagaatgagtcca |
558 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5998159 |
acctttttggttattgatcctattcccattcaacttgtcttaaattttggttttgacgatgtactttgttttcatgataatttgctttagaatgagtcca |
5998258 |
T |
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| Q |
559 |
aaacctacatttaataggataagaaa |
584 |
Q |
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| T |
5998259 |
aaacctacatttaataggataagaaa |
5998284 |
T |
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