View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19206_low_5 (Length: 506)
Name: NF19206_low_5
Description: NF19206
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19206_low_5 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 454; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 454; E-Value: 0
Query Start/End: Original strand, 3 - 488
Target Start/End: Complemental strand, 54202236 - 54201752
Alignment:
| Q |
3 |
tggtgggtagattattctgtgtctgaaaaatcagtttcagattggtatgatcttggagaatatagaacactatctgtgtctgtttggttactaggtttga |
102 |
Q |
| |
|
||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54202236 |
tggtgtgtagatccttctgtgtctgaaaaatcagtttcagattggtatgatcttggagaatatagaacactatctgtgtctgtttggttactaggtttga |
54202137 |
T |
|
| Q |
103 |
acttgtgaagcaagtgcaaaggtgatgttccttggcttggtgttgtgtctccactcactgaaggaatctctattgatcctgcattccttaacttcctctt |
202 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54202136 |
acttgtgaagcaagtgcaaaggtgatgttccttggcttggtgttgtgtctccactcactgaaggaatctctattgatcctgcattccttaacttcctctt |
54202037 |
T |
|
| Q |
203 |
atctcttgctgccttttgccattttttaagtgcttttgttgtttgctcctcaaatattcctctcttcatgtgagatcccatctgcatattttaattaaca |
302 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
54202036 |
atctcttgctgccttttgccattttttaagtgcttttgttgtttgctcctcaaatattcctctcttcatgtgagatcccatctgcaaattttaattaaca |
54201937 |
T |
|
| Q |
303 |
tatatacattttaggcctaaatttccagttgaataaatttaattcaatggtatggttaatttgaggaaatattctacctgtgtcactagtgcatagagag |
402 |
Q |
| |
|
| |||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54201936 |
tgtataca-tttaggcctaaatttccaattgaataaatttaattcaatggtatggttaatttgaggaaatattctacctgtgtcactagtgcatagagag |
54201838 |
T |
|
| Q |
403 |
gaaatgttatgtaactgcataggacttgtaaggctaccccaaggacaacccttgtcactattagtggcaagttctcatggaagcaa |
488 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54201837 |
gaaatgttatgtaactgcataggacttgtaaggctaccccaaggacaacccttgtcactattagtggcaagttctcatggaagcaa |
54201752 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University