View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19206_low_7 (Length: 492)

Name: NF19206_low_7
Description: NF19206
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19206_low_7
NF19206_low_7
[»] chr1 (5 HSPs)
chr1 (33-476)||(44612687-44613130)
chr1 (77-466)||(35899317-35899706)
chr1 (165-347)||(11544204-11544386)
chr1 (21-145)||(44145478-44145602)
chr1 (295-329)||(44145659-44145693)
[»] scaffold0061 (1 HSPs)
scaffold0061 (39-481)||(28850-29292)
[»] scaffold0017 (3 HSPs)
scaffold0017 (39-481)||(169500-169942)
scaffold0017 (29-382)||(174397-174749)
scaffold0017 (418-473)||(180969-181024)
[»] chr3 (3 HSPs)
chr3 (163-475)||(26728363-26728675)
chr3 (170-401)||(8342852-8343083)
chr3 (204-322)||(8342739-8342857)
[»] chr5 (1 HSPs)
chr5 (133-474)||(29507168-29507509)


Alignment Details
Target: chr1 (Bit Score: 344; Significance: 0; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 33 - 476
Target Start/End: Original strand, 44612687 - 44613130
Alignment:
Q  33 actgataaccgattgagtggacaattagatttcatcacttctagtaactattcccactgcattggaaatctatcatcgttgcaggaactatggctaatga 132  Q
    |||||||||||||||||||||||||||||||| || || |||||||||||||| |||||||||||||||||||||||||| |||||||||||||||  ||    
T  44612687 actgataaccgattgagtggacaattagattttatgacctctagtaactattctcactgcattggaaatctatcatcgttacaggaactatggctatgga 44612786  T
Q  133 ataatgagatttcgggcaagttgccagacctttcaatcctctcgtctttgagactgttggatcttaatgtcaataaattaactggagaaatacccacgag 232  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||    
T  44612787 ataatgagatttcgggcaagttaccagacctttcaatcctctcgtctttgagactgttggttcttaatgtcaataaattaactggagaaatacccgcgag 44612886  T
Q  233 cataagatcacttacagagttagagcaattgtacctgggcggaaactcttttgaaggtatcatctctgaatcccatttcactaagctctccaaattggaa 332  Q
    |||  |||||||||| |||||| || | |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  44612887 catcggatcacttaccgagttacagtatttgtacctgggcggaaactcttttgaaggtatcatctctgaatcccatttcactaacctctccaaattggaa 44612986  T
Q  333 aatctagacttgtcttacaactcgttgactatgaaggttagtaatgattgggttccaccttttcaattatcaacattggccttatcatcttgtaatctga 432  Q
    || |||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||| |||||||||||||||| |||    
T  44612987 aaactagacttgtctgacaactcgttgactatgaaggttagtaatgattgggttcccccttttcaattattaacattgggcttatcatcttgtaatatga 44613086  T
Q  433 attctagatttcctaattggcttcaaacacaaaatcacttatcc 476  Q
    ||||||||||||||||||||||||||||||||||| | ||||||    
T  44613087 attctagatttcctaattggcttcaaacacaaaatgaattatcc 44613130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 77 - 466
Target Start/End: Original strand, 35899317 - 35899706
Alignment:
Q  77 taactattcccactgcattggaaatctatcatcgttgcaggaactatggctaatgaataatgagatttcgggcaagttgccagacctttcaatcctctcg 176  Q
    |||||||||  |||||||||||||| |||| ||||| |||||| |||   ||   |||||| | ||| | |||| ||| ||| | ||||||||| | ||     
T  35899317 taactattcgaactgcattggaaatgtatcctcgttacaggaattatccttatcaaataatcaaattactggcatgttaccaaatctttcaatcttatca 35899416  T
Q  177 tctttgagactgttggatcttaatgtcaataaattaactggagaaatacccacgagcataagatcacttacagagttagagcaattgtacctgggcggaa 276  Q
    ||||||||| ||||| |||||  ||  |||||||||  |||||||||||||||||||||  ||||| |||  |||||| || | ||| |  || ||| ||    
T  35899417 tctttgagaatgttgtatcttgctggaaataaattatttggagaaatacccacgagcattggatcaattatggagttaaagtatttggatttgagcgtaa 35899516  T
Q  277 actcttttgaaggtatcatctctgaatcccatttcactaagctctccaaattggaaaatctagacttgtcttacaactcgttgactatgaaggttagtaa 376  Q
    || ||||||||||| ||||||||||||| ||||||||||| ||||||||||||||| ||||| | |||||||| ||||   ||||| ||||||||||| |    
T  35899517 acgcttttgaaggtgtcatctctgaatctcatttcactaacctctccaaattggaagatctatatttgtcttataactttctgactgtgaaggttagtta 35899616  T
Q  377 tgattgggttccaccttttcaattatcaacattggccttatcatcttgtaatctgaattctagatttcctaattggcttcaaacacaaaa 466  Q
    ||| |||||||| || ||| |||||  ||  |||    || ||||||| ||||| |||| |||||||||||| |||||||||||||||||    
T  35899617 tgactgggttcctccctttaaattaataaatttgaatctagcatcttgcaatctaaattatagatttcctaactggcttcaaacacaaaa 35899706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 165 - 347
Target Start/End: Complemental strand, 11544386 - 11544204
Alignment:
Q  165 tcaatcctctcgtctttgagactgttggatcttaatgtcaataaattaactggagaaatacccacgagcataagatcacttacagagttagagcaattgt 264  Q
    ||||||||||| ||||||| |  ||||  |||  ||| |||||| |||| |||||||||||||||||||||  |||||||||| ||||||||    |||     
T  11544386 tcaatcctctcatctttgacatggttgattctagatgacaataatttaattggagaaatacccacgagcattggatcacttaccgagttagaaattttga 11544287  T
Q  265 acctgggcggaaactcttttgaaggtatcatctctgaatcccatttcactaagctctccaaattggaaaatctagacttgtct 347  Q
    | ||||||||||||||||||||||| ||  |||||||||||||||||||||| ||||||||||||||| | ||||| ||||||    
T  11544286 atctgggcggaaactcttttgaaggcattgtctctgaatcccatttcactaacctctccaaattggaagaactagatttgtct 11544204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 21 - 145
Target Start/End: Original strand, 44145478 - 44145602
Alignment:
Q  21 acatttgcagctactgataaccgattgagtggacaattagatttcatcacttctagtaactattcccactgcattggaaatctatcatcgttgcaggaac 120  Q
    |||||||  ||| ||| |||||||||| | ||| | |||||||||||||||||||||||||||| |||||| ||||||||| |||||||||| |||||||    
T  44145478 acatttgttgcttctggtaaccgattgtgcggagatttagatttcatcacttctagtaactatttccactgtattggaaatttatcatcgttacaggaac 44145577  T
Q  121 tatggctaatgaataatgagatttc 145  Q
    |||   ||  |||||||||||||||    
T  44145578 tattattatggaataatgagatttc 44145602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 295 - 329
Target Start/End: Original strand, 44145659 - 44145693
Alignment:
Q  295 tctctgaatcccatttcactaagctctccaaattg 329  Q
    |||||||||||||||||||||| ||||||||||||    
T  44145659 tctctgaatcccatttcactaacctctccaaattg 44145693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0061 (Bit Score: 179; Significance: 2e-96; HSPs: 1)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 39 - 481
Target Start/End: Complemental strand, 29292 - 28850
Alignment:
Q  39 aaccgattgagtggacaattagatttcatcacttctagtaactattcccactgcattggaaatctatcatcgttgcaggaactatggctaatgaataatg 138  Q
    ||||| ||||||||  | |||||||| ||||| ||||||||| ||||||| || ||||| ||| |||||| ||| |||||||||||| ||  ||||||||    
T  29292 aaccgcttgagtggtgatttagatttgatcacctctagtaaccattcccagtgtattggtaatgtatcattgttacaggaactatggttatcgaataatg 29193  T
Q  139 agatttcgggcaagttgccagacctttcaatcctctcgtctttgagactgttggatcttaatgtcaataaattaactggagaaatacccacgagcataag 238  Q
    ||||||| |||| ||| || ||| |||||| |||||| |||||||||||||||  ||||   | ||||||||||| |||||||||||||||||||||  |    
T  29192 agatttcaggcatgttaccggacttttcaaacctctcatctttgagactgttgagtcttgtggacaataaattaattggagaaatacccacgagcatcgg 29093  T
Q  239 atcacttacagagttagagcaattgtacctgggcggaaactcttttgaaggtatcatctctgaatcccatttcactaagctctccaaattggaaaatcta 338  Q
    |||||||||||||||| ||   ||||||||| || ||||||||||||||||| || |||||||||||||||||||||| |||||||||||| |||  |||    
T  29092 atcacttacagagttaaagagtttgtacctgagccgaaactcttttgaaggtgtcgtctctgaatcccatttcactaacctctccaaattgaaaaggcta 28993  T
Q  339 gacttgtcttacaactcgttgactatgaaggttagtaatgattgggttccaccttttcaattatcaacattggccttatcatcttgtaatctgaattcta 438  Q
       |||||  ||||||| ||||||||| |||||||||||||||||||||| ||||||||||||  |  |||||  ||||||  ||||||| |||||||||    
T  28992 tggttgtccgacaactcattgactatggaggttagtaatgattgggttcctccttttcaattactagaattgggtttatcaaattgtaatatgaattcta 28893  T
Q  439 gatttcctaattggcttcaaacacaaaatcacttatcctctct 481  Q
     ||||||||||||||| |||||||||||| | |||||| ||||    
T  28892 tatttcctaattggctccaaacacaaaatgaattatccactct 28850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017 (Bit Score: 179; Significance: 2e-96; HSPs: 3)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 39 - 481
Target Start/End: Original strand, 169500 - 169942
Alignment:
Q  39 aaccgattgagtggacaattagatttcatcacttctagtaactattcccactgcattggaaatctatcatcgttgcaggaactatggctaatgaataatg 138  Q
    ||||| ||||||||  | |||||||| ||||| ||||||||| ||||||| || ||||| ||| |||||| ||| |||||||||||| ||  ||||||||    
T  169500 aaccgcttgagtggtgatttagatttgatcacctctagtaaccattcccagtgtattggtaatgtatcattgttacaggaactatggttatcgaataatg 169599  T
Q  139 agatttcgggcaagttgccagacctttcaatcctctcgtctttgagactgttggatcttaatgtcaataaattaactggagaaatacccacgagcataag 238  Q
    ||||||| |||| ||| || ||| |||||| |||||| |||||||||||||||  ||||   | ||||||||||| |||||||||||||||||||||  |    
T  169600 agatttcaggcatgttaccggacttttcaaacctctcatctttgagactgttgagtcttgtggacaataaattaattggagaaatacccacgagcatcgg 169699  T
Q  239 atcacttacagagttagagcaattgtacctgggcggaaactcttttgaaggtatcatctctgaatcccatttcactaagctctccaaattggaaaatcta 338  Q
    |||||||||||||||| ||   ||||||||| || ||||||||||||||||| || |||||||||||||||||||||| |||||||||||| |||  |||    
T  169700 atcacttacagagttaaagagtttgtacctgagccgaaactcttttgaaggtgtcgtctctgaatcccatttcactaacctctccaaattgaaaaggcta 169799  T
Q  339 gacttgtcttacaactcgttgactatgaaggttagtaatgattgggttccaccttttcaattatcaacattggccttatcatcttgtaatctgaattcta 438  Q
       |||||  ||||||| ||||||||| |||||||||||||||||||||| ||||||||||||  |  |||||  ||||||  ||||||| |||||||||    
T  169800 tggttgtccgacaactcattgactatggaggttagtaatgattgggttcctccttttcaattactagaattgggtttatcaaattgtaatatgaattcta 169899  T
Q  439 gatttcctaattggcttcaaacacaaaatcacttatcctctct 481  Q
     ||||||||||||||| |||||||||||| | |||||| ||||    
T  169900 tatttcctaattggctccaaacacaaaatgaattatccactct 169942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017; HSP #2
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 29 - 382
Target Start/End: Original strand, 174397 - 174749
Alignment:
Q  29 agctactgataaccgattgagtggacaattagatttcatcacttctagtaactattcccactgcattggaaatctatcatcgttgcaggaactatggcta 128  Q
    |||| ||| |||||||||||||||| |  |||||||  |||| || |||||||||||||||||||||| |||||||||||| || |||||  ||    ||    
T  174397 agcttctggtaaccgattgagtggagatatagatttattcacatccagtaactattcccactgcattgaaaatctatcatccttacaggatttagattta 174496  T
Q  129 atgaataatgagatttcgggcaagttgccagacctttcaatcctctcgtctttgagactgttggatcttaatgtcaataaattaactggagaaataccca 228  Q
       ||||||||||||||||||  ||| || ||||||||||| ||||| |||||||||| |||| |||||  ||  |||||||||| ||||||||||| ||    
T  174497 tcaaataatgagatttcgggcc-gttaccggacctttcaattctctcatctttgagacagttgtatcttgctgataataaattaattggagaaatacaca 174595  T
Q  229 cgagcataagatcacttacagagttagagcaattgtacctgggcggaaactcttttgaaggtatcatctctgaatcccatttcactaagctctccaaatt 328  Q
    | |||||  |||| || |  |||||| ||  ||||   ||| || ||||||||||||||||| |  |||||||||| ||||||||||| |||||||||||    
T  174596 ctagcatcggatcgctcatggagttacagacattgagtctgagcagaaactcttttgaaggtgttgtctctgaatcgcatttcactaacctctccaaatt 174695  T
Q  329 ggaaaatctagacttgtcttacaactcgttgactatgaaggttagtaatgattg 382  Q
    || |   |||||||||||||||||| |||||||| ||||| ||||| |||||||    
T  174696 ggtagccctagacttgtcttacaacccgttgactgtgaagcttagtgatgattg 174749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 418 - 473
Target Start/End: Original strand, 180969 - 181024
Alignment:
Q  418 catcttgtaatctgaattctagatttcctaattggcttcaaacacaaaatcactta 473  Q
    ||||||||||||||||||||||||||||| ||||| || |||||||||||||||||    
T  180969 catcttgtaatctgaattctagatttcctgattggtttaaaacacaaaatcactta 181024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 90; Significance: 3e-43; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 163 - 475
Target Start/End: Original strand, 26728363 - 26728675
Alignment:
Q  163 tttcaatcctctcgtctttgagactgttggatcttaatgtcaataaattaactggagaaatacccacgagcataagatcacttacagagttagagcaatt 262  Q
    ||||||||||||| |||||||||| ||||  |||||||| |||||| |||  ||||||||||||  | |||||  |||||||||| || ||||||   ||    
T  26728363 tttcaatcctctcatctttgagacggttgtctcttaatggcaataagttatgtggagaaatacctgcaagcatgggatcacttacggatttagagatttt 26728462  T
Q  263 gtacctgggcggaaactcttttgaaggtatcatctctgaatcccatttcactaagctctccaaattggaaaatctagacttgtcttacaactcgttgact 362  Q
    | ||||||| | |||||||||||||||| || |||||||||||||||||||||| |||||  |||||| | | ||||| ||||||||||| | ||||| |    
T  26728463 ggacctgggagtaaactcttttgaaggtgtcgtctctgaatcccatttcactaacctctcagaattggtagacctagatttgtcttacaatttgttgaat 26728562  T
Q  363 atgaaggttagtaatgattgggttccaccttttcaattatcaacattggcct-tatcatcttgtaatctgaattctagatttcctaattggcttcaaaca 461  Q
     ||||| ||||| || |||||||||| || |||||||||     ||| || | || | ||||| || |||||||||||||||||||||||||| ||||||    
T  26728563 gtgaagattagtgataattgggttcctccgtttcaatta-agttatttgcgtctaacgtcttgcaacctgaattctagatttcctaattggctccaaaca 26728661  T
Q  462 caaaatcacttatc 475  Q
    |||||  |||||||    
T  26728662 caaaacgacttatc 26728675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 170 - 401
Target Start/End: Original strand, 8342852 - 8343083
Alignment:
Q  170 cctctcgtctttgagactgttggatcttaatgtcaataaattaactggagaaatacccacgagcataagatcacttacagagttagagcaattgtacctg 269  Q
    |||||| || |||||| ||||| ||||| ||| ||||||| ||| |||||||||||||||||||||  ||||||||||  |||| ||| | |||  |||     
T  8342852 cctctcatccttgagagtgttgtatctttatgacaataaactaattggagaaatacccacgagcatcggatcacttacgaagttggagaatttgatccta 8342951  T
Q  270 ggcggaaactcttttgaaggtatcatctctgaatcccatttcactaagctctccaaattggaaaatctagacttgtcttacaactcgttgactatgaagg 369  Q
     || ||||||||||||| ||| || |||||||||| |||||||| || ||||| |||||| || | ||| | |||||| | ||||  |||  | ||||||    
T  8342952 agcagaaactcttttgatggtgtcgtctctgaatctcatttcacaaacctctcaaaattgaaagaactacagttgtctgataacttattgtttgtgaagg 8343051  T
Q  370 ttagtaatgattgggttccaccttttcaatta 401  Q
    |||||| | |||||||||| ||||||||||||    
T  8343052 ttagtactaattgggttcctccttttcaatta 8343083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 204 - 322
Target Start/End: Original strand, 8342739 - 8342857
Alignment:
Q  204 aataaattaactggagaaatacccacgagcataagatcacttacagagttagagcaattgtacctgggcggaaactcttttgaaggtatcatctctgaat 303  Q
    |||||||||| |||||||||||||||||||||  | || |||||||||||||||   |||  |||| || |||||||||||||||| | | |||||||||    
T  8342739 aataaattaattggagaaatacccacgagcatcgggtcgcttacagagttagaggttttgagcctgcgcagaaactcttttgaaggcaccctctctgaat 8342838  T
Q  304 cccatttcactaagctctc 322  Q
    ||||||||||||| |||||    
T  8342839 cccatttcactaacctctc 8342857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 133 - 474
Target Start/End: Complemental strand, 29507509 - 29507168
Alignment:
Q  133 ataatgagatttcgggcaagttgccagacctttcaatcctctcgtctttgagactgttggatcttaatgtcaataaattaactggagaaatacccacgag 232  Q
    ||||||||||||| |||  ||| || |||||||||  ||| || |||||||||  ||||  |||  ||  ||||||| |||||||||||||||||||| |    
T  29507509 ataatgagatttcaggcttgttacctgacctttcagccctttcatctttgagagagttgcgtctatataacaataaactaactggagaaatacccacggg 29507410  T
Q  233 cataagatcacttacagagttagagcaattgtacctgggcggaaactcttttgaaggtatcatctctgaatcccatttcactaagctctccaaattggaa 332  Q
    ||| | ||  |||||  |||||||| | |||||||| ||| | ||||||||  ||||| || |||||||||| |||||||||||  ||||||||||   |    
T  29507409 catcacattgcttacgaagttagagtatttgtacctaggcagcaactctttcaaaggtgtcctctctgaatctcatttcactaacttctccaaattacta 29507310  T
Q  333 aatctagacttgtcttacaactcgttgactatgaaggttagtaatgattgggttccaccttttcaattatcaacattggccttatcatcttgtaatctga 432  Q
       ||| | |||||||  |||  ||||||| |||||||||||| |||||||||||| ||||||||||||  |   |||    || ||||||||||||| |    
T  29507309 ggcctacagttgtcttctaacctgttgactgtgaaggttagtactgattgggttccgccttttcaattaaaatatttgttactagcatcttgtaatctca 29507210  T
Q  433 attctagatttcctaattggcttcaaacacaaaatcacttat 474  Q
    | ||||  ||||||||||||||||  |  |||||||||||||    
T  29507209 actctacctttcctaattggcttcttaatcaaaatcacttat 29507168  T

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