View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19206_low_8 (Length: 448)
Name: NF19206_low_8
Description: NF19206
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19206_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 416; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 416; E-Value: 0
Query Start/End: Original strand, 17 - 432
Target Start/End: Original strand, 2259037 - 2259452
Alignment:
| Q |
17 |
cacagaaaaggaacaaaattggttaaaccatggtggagacatatacaacagaagatatgcaagcaaggaacacaaaatcaaccttaaaacaattagcaac |
116 |
Q |
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| T |
2259037 |
cacagaaaaggaacaaaattggttaaaccatggtggagacatatacaacagaagatatgcaagcaaggaacacaaaatcaaccttaaaacaattagcaac |
2259136 |
T |
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| Q |
117 |
ttaactttgaagtgggaattcaatgcaggcaaagacataactgcaacaccagcaattttcaatggaacaatatattttccttcatggaatggtttaatat |
216 |
Q |
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| T |
2259137 |
ttaactttgaagtgggaattcaatgcaggcaaagacataactgcaacaccagcaattttcaatggaacaatatattttccttcatggaatggtttaatat |
2259236 |
T |
|
| Q |
217 |
ttgcagtgagagaaattgatggaactcttgtttggaaaaagaatttgacaaaattaactggtctagattcaataggttttattgcaaatgttaattggac |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2259237 |
ttgcagtgagagaaattgatggaactcttgtttggaaaaagaatttgacaaaattaactggtctagattcaataggttttattgcaaatgttaattggac |
2259336 |
T |
|
| Q |
317 |
agtggctagggcaacaccaactatagcagttgatgaggatcttgtgattgtgggaatatatggaccagctgttgttattgctgtgaatagatcaactggt |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2259337 |
agtggctagggcaacaccaactatagcagttgatgaggatcttgtgattgtgggaatatatggaccagctgttgttattgctgtgaatagatcaactggt |
2259436 |
T |
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| Q |
417 |
gatttaatttggcaga |
432 |
Q |
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| T |
2259437 |
gatttaatttggcaga |
2259452 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 40 - 253
Target Start/End: Complemental strand, 2230038 - 2229825
Alignment:
| Q |
40 |
taaaccatggtggagacatatacaacagaagatatgcaagcaaggaacacaaaatcaaccttaaaacaattagcaacttaactttgaagtgggaattcaa |
139 |
Q |
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|||||||||||||||| ||| ||| ||||| |||||| ||| |||||||| ||||| | |||| || ||| ||| |||||||||| ||||||| |
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| T |
2230038 |
taaaccatggtggagatttattcaatagaaggtatgcatacaatgaacacaagatcaatccagaaacggtttctaacctaagtttgaagtggaaattcaa |
2229939 |
T |
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| Q |
140 |
tgcaggcaaagacataactgcaacaccagcaattttcaatggaacaatatattttccttcatggaatggtttaatatttgcagtgagagaaattgatgga |
239 |
Q |
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|||||||||||| || || ||||||||| |||| | |||||| ||||| |||||||| | ||||||||| |||| |||| | | | ||||||||||| |
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| T |
2229938 |
tgcaggcaaagatattacagcaacaccaacaatatacaatggtacaatttattttccatgctggaatggtaacatatatgcaattaaacaaattgatgga |
2229839 |
T |
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| Q |
240 |
actcttgtttggaa |
253 |
Q |
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| T |
2229838 |
tcacttgtttggaa |
2229825 |
T |
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Back To:
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