View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19207_high_12 (Length: 336)
Name: NF19207_high_12
Description: NF19207
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19207_high_12 |
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| [»] scaffold0341 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 302; Significance: 1e-170; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 12 - 321
Target Start/End: Complemental strand, 6511462 - 6511153
Alignment:
| Q |
12 |
aagaagaagacaaaattaatattactaccgagcaactgcaattcgacttcaacaccatgcgtattgctacaaatgatttctcagattctaataaacttgg |
111 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6511462 |
aagaagaagacaaaattaatattactaccgagcaactgcaattcgacttcaacaccatgcgtattgctacaaatgatttctcagattctaataaacttgg |
6511363 |
T |
|
| Q |
112 |
aaaaggaggatttgggtttgtttacaaagtaaaatagcacaattaaacattactttattaattaaattaaaatatgttatactcttacacttgttattaa |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6511362 |
aaaaggaggatttgggtttgtttacaaagtaaaatagcactattaaacattactttattaattaaattaaaatatgttatactcttacacttgttattaa |
6511263 |
T |
|
| Q |
212 |
agcttatcattactaaataatatttattttcagggtaggttctccaacgggcaagaggttgctgtcaaaaggttatcaatgaattccggacaaggagatc |
311 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6511262 |
agcttatcattactaaatattatttattttcagggtaggttctccaacgggcaagaggttgctgtcaaaaggttatcaatgaattccggacaaggagatc |
6511163 |
T |
|
| Q |
312 |
tagagtttaa |
321 |
Q |
| |
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|||||||||| |
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|
| T |
6511162 |
tagagtttaa |
6511153 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 161; E-Value: 8e-86
Query Start/End: Original strand, 12 - 321
Target Start/End: Complemental strand, 6503839 - 6503533
Alignment:
| Q |
12 |
aagaagaagacaaaattaatattactaccgagcaactgcaattcgacttcaacaccatgcgtattgctacaaatgatttctcagattctaataaacttgg |
111 |
Q |
| |
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||||||| |||| |||| ||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||| |||||||||| |
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| T |
6503839 |
aagaagatgacataattgatattactaccgagcaactgcaattagacttcaacaccatacgtattgctacaaatgatttctcagattctgataaacttgg |
6503740 |
T |
|
| Q |
112 |
aaaaggaggatttgggtttgtttacaaagtaaaatagcacaattaaacattactttattaattaaattaaaatatgttatactcttacacttgttattaa |
211 |
Q |
| |
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|||||| ||||||||| |||||||||||||||||| | | |||||||| | |||||||||| ||||||||| |||||||||| ||||||| || |
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| T |
6503739 |
aaaaggcggatttggggctgtttacaaagtaaaataacgccattaaacactgctttattaat-----taaaatatgatatactcttatgattgttataaa |
6503645 |
T |
|
| Q |
212 |
agcttatcattactaa--ataatatttattttcagggtaggttctccaacgggcaagaggttgctgtcaaaaggttatcaatgaattccggacaaggaga |
309 |
Q |
| |
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| |||||| ||| ||| ||| ||||||||||||||||||| ||| ||| || ||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
6503644 |
aacttatcgttattaaatatattatttattttcagggtaggctcttcaatggacaagaggttgctgtcaaaaggttatcaatgaattctggacaaggaga |
6503545 |
T |
|
| Q |
310 |
tctagagtttaa |
321 |
Q |
| |
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| ||||||||| |
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|
| T |
6503544 |
ttcagagtttaa |
6503533 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 57 - 310
Target Start/End: Complemental strand, 6498474 - 6498225
Alignment:
| Q |
57 |
acttcaacaccatgcgtattgctacaaatgatttctcagattctaataaacttggaaaaggaggatttgggtttgtttacaaagtaaaatagcacaatta |
156 |
Q |
| |
|
||||||||||||| |||| |||||||||||| ||||| |||||||| |||||||| |||| ||||| || ||||||||||||||||||| ||| |||| |
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| T |
6498474 |
acttcaacaccatacgtaatgctacaaatgacttctcgcattctaatcaacttggagaaggcggattcggagttgtttacaaagtaaaataacactatta |
6498375 |
T |
|
| Q |
157 |
aacattactttattaattaaattaaaatatgttatactcttacacttgttat-taaagcttatcattactaaataatatttattttcagggtaggttctc |
255 |
Q |
| |
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||||| |||| ||| |||||||||||| |||||||| | ||||||| | ||| ||||||| | ||||||||||| ||||||||||||||| | || |
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|
| T |
6498374 |
aacatcacttcatt-----aattaaaatatgatatactctaatacttgttttgaaaaacttatcactcctaaataatatatattttcagggtaggctatc |
6498280 |
T |
|
| Q |
256 |
caacgggcaagaggttgctgtcaaaaggttatcaatgaattccggacaaggagat |
310 |
Q |
| |
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||| || |||||| ||||||| |||||||| ||||||| ||| |||||||||||| |
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|
| T |
6498279 |
caatggacaagagattgctgttaaaaggttgtcaatgagttcgggacaaggagat |
6498225 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 46 - 172
Target Start/End: Complemental strand, 6516027 - 6515901
Alignment:
| Q |
46 |
actgcaattcgacttcaacaccatgcgtattgctacaaatgatttctcagattctaataaacttggaaaaggaggatttgggtttgtttacaaagtaaaa |
145 |
Q |
| |
|
|||||||||| ||||||||||||| |||||||||||||||||||||||||||||| ||||||||||| |||||||||| || ||||||||||||||||| |
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|
| T |
6516027 |
actgcaattccacttcaacaccatacgtattgctacaaatgatttctcagattctgataaacttggacaaggaggattcggagttgtttacaaagtaaaa |
6515928 |
T |
|
| Q |
146 |
tagcacaattaaacattactttattaa |
172 |
Q |
| |
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|| ||| |||||||||||||||||||| |
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| T |
6515927 |
taacactattaaacattactttattaa |
6515901 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 205 - 321
Target Start/End: Complemental strand, 6515692 - 6515576
Alignment:
| Q |
205 |
ttattaaagcttatcattactaaataatatttattttcagggtaggttctccaacgggcaagaggttgctgtcaaaaggttatcaatgaattccggacaa |
304 |
Q |
| |
|
|||| ||| |||||||||| ||||| ||||||||||| |||||||| |||| || || | ||| | ||| |||||||||||||||||||||| |||||| |
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|
| T |
6515692 |
ttatgaaaacttatcattattaaatgatatttatttttagggtaggctctctaatggactagaaatcgctatcaaaaggttatcaatgaattctggacaa |
6515593 |
T |
|
| Q |
305 |
ggagatctagagtttaa |
321 |
Q |
| |
|
||||||||||||||||| |
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|
| T |
6515592 |
ggagatctagagtttaa |
6515576 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0341 (Bit Score: 294; Significance: 1e-165; HSPs: 2)
Name: scaffold0341
Description:
Target: scaffold0341; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 12 - 321
Target Start/End: Complemental strand, 13141 - 12833
Alignment:
| Q |
12 |
aagaagaagacaaaattaatattactaccgagcaactgcaattcgacttcaacaccatgcgtattgctacaaatgatttctcagattctaataaacttgg |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
13141 |
aagaagaagacaaaattaatattactaccgagcaactgcaattcgacttcaacaccatgcgtattgctacaaatgatttctcagattctaataaacttgg |
13042 |
T |
|
| Q |
112 |
aaaaggaggatttgggtttgtttacaaagtaaaatagcacaattaaacattactttattaattaaattaaaatatgttatactcttacacttgttattaa |
211 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
13041 |
aaa-ggaggatttgggtttgtttacaaagtaaaatagcactattaaacattactttattaattaaattaaaatatgttatactcttacacttgttattaa |
12943 |
T |
|
| Q |
212 |
agcttatcattactaaataatatttattttcagggtaggttctccaacgggcaagaggttgctgtcaaaaggttatcaatgaattccggacaaggagatc |
311 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
12942 |
agcttatcattactaaatattatttattttcagggtaggttctccaacgggcaagaggttgctgtcaaaaggttatcaatgaattccggacaaggagatc |
12843 |
T |
|
| Q |
312 |
tagagtttaa |
321 |
Q |
| |
|
|||||||||| |
|
|
| T |
12842 |
tagagtttaa |
12833 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0341; HSP #2
Raw Score: 161; E-Value: 8e-86
Query Start/End: Original strand, 12 - 321
Target Start/End: Complemental strand, 5521 - 5215
Alignment:
| Q |
12 |
aagaagaagacaaaattaatattactaccgagcaactgcaattcgacttcaacaccatgcgtattgctacaaatgatttctcagattctaataaacttgg |
111 |
Q |
| |
|
||||||| |||| |||| ||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
5521 |
aagaagatgacataattgatattactaccgagcaactgcaattagacttcaacaccatacgtattgctacaaatgatttctcagattctgataaacttgg |
5422 |
T |
|
| Q |
112 |
aaaaggaggatttgggtttgtttacaaagtaaaatagcacaattaaacattactttattaattaaattaaaatatgttatactcttacacttgttattaa |
211 |
Q |
| |
|
|||||| ||||||||| |||||||||||||||||| | | |||||||| | |||||||||| ||||||||| |||||||||| ||||||| || |
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|
| T |
5421 |
aaaaggcggatttggggctgtttacaaagtaaaataacgccattaaacactgctttattaat-----taaaatatgatatactcttatgattgttataaa |
5327 |
T |
|
| Q |
212 |
agcttatcattactaa--ataatatttattttcagggtaggttctccaacgggcaagaggttgctgtcaaaaggttatcaatgaattccggacaaggaga |
309 |
Q |
| |
|
| |||||| ||| ||| ||| ||||||||||||||||||| ||| ||| || ||||||||||||||||||||||||||||||||||| ||||||||||| |
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|
| T |
5326 |
aacttatcgttattaaatatattatttattttcagggtaggctcttcaatggacaagaggttgctgtcaaaaggttatcaatgaattctggacaaggaga |
5227 |
T |
|
| Q |
310 |
tctagagtttaa |
321 |
Q |
| |
|
| ||||||||| |
|
|
| T |
5226 |
ttcagagtttaa |
5215 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 75 - 126
Target Start/End: Complemental strand, 28860732 - 28860681
Alignment:
| Q |
75 |
ttgctacaaatgatttctcagattctaataaacttggaaaaggaggatttgg |
126 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||| |||| |||||||| |
|
|
| T |
28860732 |
ttgctacaaatgacttctcagattctaataaacttggggaaggcggatttgg |
28860681 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 75 - 126
Target Start/End: Complemental strand, 28829826 - 28829775
Alignment:
| Q |
75 |
ttgctacaaatgatttctcagattctaataaacttggaaaaggaggatttgg |
126 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||| |||| |||||||| |
|
|
| T |
28829826 |
ttgctacaaatgatttctgtgattctaataaacttgggcaaggtggatttgg |
28829775 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 75 - 126
Target Start/End: Complemental strand, 28855526 - 28855475
Alignment:
| Q |
75 |
ttgctacaaatgatttctcagattctaataaacttggaaaaggaggatttgg |
126 |
Q |
| |
|
||||||||||||| ||||| ||||||||||||||||| |||| |||||||| |
|
|
| T |
28855526 |
ttgctacaaatgacttctctgattctaataaacttggcgaaggcggatttgg |
28855475 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 77 - 126
Target Start/End: Complemental strand, 28875293 - 28875244
Alignment:
| Q |
77 |
gctacaaatgatttctcagattctaataaacttggaaaaggaggatttgg |
126 |
Q |
| |
|
||||||||||| ||||| ||||||||||||||||| |||| |||||||| |
|
|
| T |
28875293 |
gctacaaatgacttctctgattctaataaacttggggaaggtggatttgg |
28875244 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 75 - 135
Target Start/End: Complemental strand, 27369504 - 27369444
Alignment:
| Q |
75 |
ttgctacaaatgatttctcagattctaataaacttggaaaaggaggatttgggtttgttta |
135 |
Q |
| |
|
||||||| | ||||||||| ||||||||||||||||| |||| |||||||| ||||||| |
|
|
| T |
27369504 |
ttgctacgagtgatttctctaattctaataaacttggacaaggtggatttggaattgttta |
27369444 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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