View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19207_high_15 (Length: 270)
Name: NF19207_high_15
Description: NF19207
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19207_high_15 |
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| [»] chr1 (3 HSPs) |
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| [»] scaffold0004 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 106; Significance: 4e-53; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 106 - 270
Target Start/End: Original strand, 35379040 - 35379204
Alignment:
| Q |
106 |
atgtttcaatcaaccgttggattgaaaaaggagagatggctgaactaaaaaggctagagaggatccacatccgtaaaaacaatgatatgagnnnnnnnnn |
205 |
Q |
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| T |
35379040 |
atgtttcaatcaacagttggattgaaaaaggagagatggccgaactaaaaaggctagagaggatccacatccgtaaaaacaatgatatgagttttttatt |
35379139 |
T |
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| Q |
206 |
nnnngattaaataatcgagtggctagaaattcacgcttataagatgaataggtggagaatccgat |
270 |
Q |
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| T |
35379140 |
ttttggtcaaatagtcgagtggctagaaattcacgcttataagatgaataggtggagaatccgat |
35379204 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 5 - 90
Target Start/End: Original strand, 35378927 - 35379012
Alignment:
| Q |
5 |
tgtcgaagaatatatataacatggtaaaaacaagggtttggatcctctcatgctgtctatcctgcctttacctaatcattttctaa |
90 |
Q |
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| T |
35378927 |
tgtcaaagaaaatatataacatggtaaaaacaagggtttggatcctctcatgctgtctatcctaccttaacctaatcatttactaa |
35379012 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 106 - 170
Target Start/End: Complemental strand, 30623287 - 30623223
Alignment:
| Q |
106 |
atgtttcaatcaaccgttggattgaaaaaggagagatggctgaactaaaaaggctagagaggatc |
170 |
Q |
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| T |
30623287 |
atgtatcaatcaactattgaattaaaaaaggagagatggctgaaccaaaaaggctagagtggatc |
30623223 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 106 - 177
Target Start/End: Complemental strand, 31858314 - 31858243
Alignment:
| Q |
106 |
atgtttcaatcaaccgttggattgaaaaaggagagatggctgaactaaaaaggctagagaggatccacatcc |
177 |
Q |
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| T |
31858314 |
atgtatcaatcaattgttagattgaaaaaggagagaaggctgaaccaaaaaggctggagaggatccacatcc |
31858243 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 106 - 179
Target Start/End: Complemental strand, 36565248 - 36565175
Alignment:
| Q |
106 |
atgtttcaatcaaccgttggattgaaaaaggagagatggctgaactaaaaaggctagagaggatccacatccgt |
179 |
Q |
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| T |
36565248 |
atgtatcaatcaaccattaaattgaaaaaggagagatggctgaaccaaaagggcaggagaggatccaaatccgt |
36565175 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0004 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0004
Description:
Target: scaffold0004; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 112 - 177
Target Start/End: Original strand, 372043 - 372108
Alignment:
| Q |
112 |
caatcaaccgttggattgaaaaaggagagatggctgaactaaaaaggctagagaggatccacatcc |
177 |
Q |
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| T |
372043 |
caatcaaccgttggatcaaaaaaggagagggggctgcacaaaaaatgctagagaggatccaaatcc |
372108 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 106 - 147
Target Start/End: Original strand, 46864945 - 46864986
Alignment:
| Q |
106 |
atgtttcaatcaaccgttggattgaaaaaggagagatggctg |
147 |
Q |
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| T |
46864945 |
atgtatcaatcaaccgttggattggaaaaagagagatggctg |
46864986 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 106 - 175
Target Start/End: Complemental strand, 40084145 - 40084076
Alignment:
| Q |
106 |
atgtttcaatcaaccgttggattgaaaaaggagagatggctgaactaaaaaggctagagaggatccacat |
175 |
Q |
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| T |
40084145 |
atgtatcaatcaaccgttgaattgaaaaatgagatatggttgaaccaaaagggccggagagaatccacat |
40084076 |
T |
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