View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19207_high_18 (Length: 259)
Name: NF19207_high_18
Description: NF19207
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19207_high_18 |
 | |
|
| [»] scaffold1155 (1 HSPs) |
| | |
|
| [»] scaffold0345 (1 HSPs) |
| | |
|
| [»] scaffold0105 (1 HSPs) |
| | |
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Alignment Details
Target: chr4 (Bit Score: 220; Significance: 1e-121; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 244
Target Start/End: Complemental strand, 21833440 - 21833197
Alignment:
| Q |
1 |
agaatgtacttttcactatataaggggtagctaacgtcgagttcttcgagcaaggggaaacattccacgatgaggaacaggtcagtggtattgaaattag |
100 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
21833440 |
agaatgtacttttgactatataaggggtagctaacgtcgagttcttcgtgcaaggggaaacattcgacgatgaggaacaggtcagtggtattgaaattag |
21833341 |
T |
|
| Q |
101 |
caattctggaacaagggagagaggtcaaagtagtaaagttttgtgcaaaaactcgcaacccatctgcgggaatggtgggtttgttggagatattgagtga |
200 |
Q |
| |
|
||||| ||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21833340 |
caattttggaacaagtgagagaggtcaaagtagtaatgttttgtgcaaaaactcgcaacccatctgcgggaatggtgggtttgttggagatattgagtga |
21833241 |
T |
|
| Q |
201 |
cttgatgttcaatgatgggaaacgagagatttgacggagaaggt |
244 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21833240 |
cttgatgttcaatgatgggaaacgagagatttgacggagaaggt |
21833197 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 108 - 214
Target Start/End: Original strand, 553759 - 553865
Alignment:
| Q |
108 |
ggaacaagggagagaggtcaaagtagtaaagttttgtgcaaaaactcgcaacccatctgcgggaatggtgggtttgttggagatattgagtgacttgatg |
207 |
Q |
| |
|
|||||| | ||||||||||||||| |||| |||||| | ||| |||||||||||| |||||||||||||||||| | ||||| || |||||| ||| | |
|
|
| T |
553759 |
ggaacaggtgagagaggtcaaagttgtaatgttttgggagaaagctcgcaacccatttgcgggaatggtgggtttttgggagagatcgagtgatgtgagg |
553858 |
T |
|
| Q |
208 |
ttcaatg |
214 |
Q |
| |
|
||||||| |
|
|
| T |
553859 |
ttcaatg |
553865 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 31 - 200
Target Start/End: Complemental strand, 7225293 - 7225125
Alignment:
| Q |
31 |
ctaacgtcgagttcttcgagcaaggggaaacattccacgatgaggaacaggtcagtggtattgaaattagcaattctggaacaagggagagaggtcaaag |
130 |
Q |
| |
|
|||| |||||||||||||||||| |||||||| ||| |||||||||||| ||||||| || ||| | | || | ||||||| | |||||||||||||| |
|
|
| T |
7225293 |
ctaaggtcgagttcttcgagcaaagggaaacaatccgcgatgaggaacatgtcagtgctagtgaca-gaataaatgtggaacatgtgagagaggtcaaag |
7225195 |
T |
|
| Q |
131 |
tagtaaagttttgtgcaaaaactcgcaacccatctgcgggaatggtgggtttgttggagatattgagtga |
200 |
Q |
| |
|
| |||| ||||| | || | || |||||||| ||| |||||| ||| ||| || |||||||| ||||| |
|
|
| T |
7225194 |
ttgtaatattttgagaaagagcttgcaacccacgtgctggaatgatggatttattcgagatattaagtga |
7225125 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 37 - 200
Target Start/End: Complemental strand, 8186486 - 8186323
Alignment:
| Q |
37 |
tcgagttcttcgagcaaggggaaacattccacgatgaggaacaggtcagtggtattgaaattagcaattctggaacaagggagagaggtcaaagtagtaa |
136 |
Q |
| |
|
||||||||||| || || || ||||| || |||||||||| | ||||||| |||||| | |||| ||||||| | ||| ||||||||||| |||| |
|
|
| T |
8186486 |
tcgagttcttctaggaaaggaaaacaatcggcgatgaggaagatgtcagtgctattgatagattcaatgttggaacatgtgagtgaggtcaaagttgtaa |
8186387 |
T |
|
| Q |
137 |
agttttgtgcaaaaactcgcaacccatctgcgggaatggtgggtttgttggagatattgagtga |
200 |
Q |
| |
|
||| | | | ||||||||| |||| ||| ||||||||||||||||| |||| ||||||||| |
|
|
| T |
8186386 |
tatttcgggagagaactcgcaatccatttgcaggaatggtgggtttgttagagagattgagtga |
8186323 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 212
Target Start/End: Original strand, 661902 - 661962
Alignment:
| Q |
152 |
ctcgcaacccatctgcgggaatggtgggtttgttggagatattgagtgacttgatgttcaa |
212 |
Q |
| |
|
||||||| |||| ||||||||||||| || |||||||| |||||||||| |||| ||||| |
|
|
| T |
661902 |
ctcgcaaaccattagcgggaatggtggtttggttggagagattgagtgacgtgattttcaa |
661962 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 79; Significance: 5e-37; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 39 - 197
Target Start/End: Complemental strand, 19467556 - 19467398
Alignment:
| Q |
39 |
gagttcttcgagcaaggggaaacattccacgatgaggaacaggtcagtggtattgaaattagcaattctggaacaagggagagaggtcaaagtagtaaag |
138 |
Q |
| |
|
||||||||||||||| || ||||||||| |||||||||||||||||||||||||||||| ||||| | |||||| ||||||||||||||| |||| |
|
|
| T |
19467556 |
gagttcttcgagcaaaggaaaacattccgcgatgaggaacaggtcagtggtattgaaatctgcaatgtcgaaacaagtgagagaggtcaaagttgtaata |
19467457 |
T |
|
| Q |
139 |
ttttgtgcaaaaactcgcaacccatctgcgggaatggtgggtttgttggagatattgag |
197 |
Q |
| |
|
||||| | |||||||||||||||| ||||||||||||| || ||||||||||| |||| |
|
|
| T |
19467456 |
ttttgagtgaaaactcgcaacccatttgcgggaatggtgtgtctgttggagataatgag |
19467398 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 39 - 193
Target Start/End: Original strand, 7555129 - 7555283
Alignment:
| Q |
39 |
gagttcttcgagcaaggggaaacattccacgatgaggaacaggtcagtggtattgaaattagcaattctggaacaagggagagaggtcaaagtagtaaag |
138 |
Q |
| |
|
||||||||||||||| ||||||||||| | ||||| |||| |||| || |||||| | | | ||| ||||||||| ||| ||||| ||||| |||| |
|
|
| T |
7555129 |
gagttcttcgagcaaagggaaacattcagcaatgagtaacaagtcattgctattgatagaatccattttggaacaagtgagtgaggttaaagttgtaata |
7555228 |
T |
|
| Q |
139 |
ttttgtgcaaaaactcgcaacccatctgcgggaatggtgggtttgttggagatat |
193 |
Q |
| |
|
||||| | ||| ||||||| ||| ||| || |||||||||| |||||| |||| |
|
|
| T |
7555229 |
ttttgggagaaagctcgcaatccaattgcagggatggtgggttggttggaaatat |
7555283 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 67; Significance: 7e-30; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 40 - 242
Target Start/End: Original strand, 10615645 - 10615847
Alignment:
| Q |
40 |
agttcttcgagcaaggggaaacattccacgatgaggaacaggtcagtggtattgaaattagcaattctggaacaagggagagaggtcaaagtagtaaagt |
139 |
Q |
| |
|
||||||||||| || ||||||||||| | || |||||||| ||| | ||||||| ||||| || |||||||| ||||||||||||||| |||| | |
|
|
| T |
10615645 |
agttcttcgagtaaagggaaacattctgcaataaggaacagatcactactattgaagttagcgatgtgggaacaagtgagagaggtcaaagttgtaatct |
10615744 |
T |
|
| Q |
140 |
tttgtgcaaaaactcgcaacccatctgcgggaatggtgggtttgttggagatattgagtgacttgatgttcaatgatgggaaacgagagatttgacggag |
239 |
Q |
| |
|
|||| | ||| |||| ||||||| |||||||| ||||||| |||||| ||||| ||||| |||||||||||||||||||||||||||||| ||||| |
|
|
| T |
10615745 |
tttgggagaaagctcgtaacccatttgcgggaactgtgggttggttggaaatattaagtgatgtgatgttcaatgatgggaaacgagagattttgcggag |
10615844 |
T |
|
| Q |
240 |
aag |
242 |
Q |
| |
|
||| |
|
|
| T |
10615845 |
aag |
10615847 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 39 - 177
Target Start/End: Complemental strand, 10169175 - 10169037
Alignment:
| Q |
39 |
gagttcttcgagcaaggggaaacattccacgatgaggaacaggtcagtggtattgaaattagcaattctggaacaagggagagaggtcaaagtagtaaag |
138 |
Q |
| |
|
||||||||| ||||| || |||||||| |||| || |||| |||||| ||||| |||| | |||| |||||||| ||||||||||||||| ||| |
|
|
| T |
10169175 |
gagttcttcaagcaaaggaaaacattctgcgataagaaacaagtcagtagtattaaaatcatcaatgtcggaacaagtgagagaggtcaaagttctaata |
10169076 |
T |
|
| Q |
139 |
ttttgtgcaaaaactcgcaacccatctgcgggaatggtg |
177 |
Q |
| |
|
||||| | |||||||||||||||| ||||||||||||| |
|
|
| T |
10169075 |
ttttgagagaaaactcgcaacccatttgcgggaatggtg |
10169037 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 39 - 177
Target Start/End: Complemental strand, 10176700 - 10176562
Alignment:
| Q |
39 |
gagttcttcgagcaaggggaaacattccacgatgaggaacaggtcagtggtattgaaattagcaattctggaacaagggagagaggtcaaagtagtaaag |
138 |
Q |
| |
|
||||||||| ||||| || |||||||| |||| || |||| |||||| ||||| |||| | |||| |||||||| ||||||||||||||| ||| |
|
|
| T |
10176700 |
gagttcttcaagcaaaggaaaacattctgcgataagaaacaagtcagtagtattaaaatcatcaatgtcggaacaagtgagagaggtcaaagttctaata |
10176601 |
T |
|
| Q |
139 |
ttttgtgcaaaaactcgcaacccatctgcgggaatggtg |
177 |
Q |
| |
|
||||| | |||||||||||||||| ||||||||||||| |
|
|
| T |
10176600 |
ttttgagagaaaactcgcaacccatttgcgggaatggtg |
10176562 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 108 - 242
Target Start/End: Original strand, 6417092 - 6417226
Alignment:
| Q |
108 |
ggaacaagggagagaggtcaaagtagtaaagttttgtgcaaaaactcgcaacccatctgcgggaatggtgggtttgttggagatattgagtgacttgatg |
207 |
Q |
| |
|
|||||||| ||||||||||||||| ||| ||||| | ||| |||| ||||||| | |||||| ||||||| |||||||||||| ||||| ||||| |
|
|
| T |
6417092 |
ggaacaagtgagagaggtcaaagttgtattcttttgggagaaagctcgtaacccatttacgggaaaagtgggttggttggagatattaagtgatgtgatg |
6417191 |
T |
|
| Q |
208 |
ttcaatgatgggaaacgagagatttgacggagaag |
242 |
Q |
| |
|
||||||||||| ||||||||||||| ||||||||| |
|
|
| T |
6417192 |
ttcaatgatggaaaacgagagattttacggagaag |
6417226 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 107 - 232
Target Start/End: Complemental strand, 7993606 - 7993481
Alignment:
| Q |
107 |
tggaacaagggagagaggtcaaagtagtaaagttttgtgcaaaaactcgcaacccatctgcgggaatggtgggtttgttggagatattgagtgacttgat |
206 |
Q |
| |
|
|||||||| ||||||||||||| | |||| |||||| ||||| ||||||| |||| ||||||| | || || || ||||||||| || || |||| |
|
|
| T |
7993606 |
tggaacaattgagagaggtcaaaattgtaatgttttgggcaaatgctcgcaaaccataggcgggaaagttgcattggtcggagatattaagggatgtgat |
7993507 |
T |
|
| Q |
207 |
gttcaatgatgggaaacgagagattt |
232 |
Q |
| |
|
|||||||||||||||| |||||||| |
|
|
| T |
7993506 |
gttcaatgatgggaaagtagagattt |
7993481 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 40 - 242
Target Start/End: Complemental strand, 13469773 - 13469571
Alignment:
| Q |
40 |
agttcttcgagcaaggggaaacattccacgatgaggaacaggtcagtggtattgaaattagcaattctggaacaagggagagaggtcaaagtagtaaagt |
139 |
Q |
| |
|
|||||||| ||||| || |||||||| | || |||||||||||| || |||||||||||||||| |||||||| ||||||||||| || ||| | |
|
|
| T |
13469773 |
agttcttcaagcaacggaaaacattctgcaataaggaacaggtcactgctattgaaattagcaatgtgggaacaagtgagagaggtcagcgttgtattct |
13469674 |
T |
|
| Q |
140 |
tttgtgcaaaaactcgcaacccatctgcgggaatggtgggtttgttggagatattgagtgacttgatgttcaatgatgggaaacgagagatttgacggag |
239 |
Q |
| |
|
|||| | ||| |||| ||||||| ||| |||| ||||||| |||||||| ||| ||||| ||||||||||||||| ||| |||||||||| ||||| |
|
|
| T |
13469673 |
tttgggagaaagctcgtaacccatttgcaggaacagtgggttggttggagagattaagtgatgtgatgttcaatgatgagaagcgagagattttgcggag |
13469574 |
T |
|
| Q |
240 |
aag |
242 |
Q |
| |
|
||| |
|
|
| T |
13469573 |
aag |
13469571 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 108 - 163
Target Start/End: Complemental strand, 51763446 - 51763391
Alignment:
| Q |
108 |
ggaacaagggagagaggtcaaagtagtaaagttttgtgcaaaaactcgcaacccat |
163 |
Q |
| |
|
|||||||| |||||| |||||||| |||| ||||||| ||||||||||||||||| |
|
|
| T |
51763446 |
ggaacaagtgagagatgtcaaagttgtaatcttttgtgaaaaaactcgcaacccat |
51763391 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1155 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold1155
Description:
Target: scaffold1155; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 148 - 232
Target Start/End: Complemental strand, 1902 - 1821
Alignment:
| Q |
148 |
aaaactcgcaacccatctgcgggaatggtgggtttgttggagatattgagtgacttgatgttcaatgatgggaaacgagagattt |
232 |
Q |
| |
|
|||||||||||||||||||||||||| |||||| || ||||| ||||||||| ||| ||||| |||||||||||||||||| |
|
|
| T |
1902 |
aaaactcgcaacccatctgcgggaattatgggttggtaggagagattgagtgatgtgaggttca---atgggaaacgagagattt |
1821 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0345 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0345
Description:
Target: scaffold0345; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 148 - 232
Target Start/End: Original strand, 8314 - 8395
Alignment:
| Q |
148 |
aaaactcgcaacccatctgcgggaatggtgggtttgttggagatattgagtgacttgatgttcaatgatgggaaacgagagattt |
232 |
Q |
| |
|
|||||||||||||||||||||||||| |||||| || ||||| ||||||||| ||| ||||| |||||||||||||||||| |
|
|
| T |
8314 |
aaaactcgcaacccatctgcgggaattatgggttggtaggagagattgagtgatgtgaggttca---atgggaaacgagagattt |
8395 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0105 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0105
Description:
Target: scaffold0105; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 148 - 232
Target Start/End: Complemental strand, 30665 - 30584
Alignment:
| Q |
148 |
aaaactcgcaacccatctgcgggaatggtgggtttgttggagatattgagtgacttgatgttcaatgatgggaaacgagagattt |
232 |
Q |
| |
|
|||||||||||||||||||||||||| |||||| || ||||| ||||||||| ||| ||||| |||||||||||||||||| |
|
|
| T |
30665 |
aaaactcgcaacccatctgcgggaattatgggttggtaggagagattgagtgatgtgaggttca---atgggaaacgagagattt |
30584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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