View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19207_high_26 (Length: 231)
Name: NF19207_high_26
Description: NF19207
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19207_high_26 |
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Alignment Details
Target: chr4 (Bit Score: 93; Significance: 2e-45; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 14 - 118
Target Start/End: Complemental strand, 36000667 - 36000563
Alignment:
| Q |
14 |
attatactctcatcaaagggaaatagtagtgtttaggaatcaaagtttaccgattgatagattcacatggagattcttacgatttcaacccaattttagg |
113 |
Q |
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| T |
36000667 |
attatactctcatcaaagggaaatagtagtgtttagaaatcaaagtttaccaattgatagattcacatggagattcttacgatttcaacccaattttaga |
36000568 |
T |
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| Q |
114 |
agttt |
118 |
Q |
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||||| |
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| T |
36000567 |
agttt |
36000563 |
T |
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Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 182 - 221
Target Start/End: Complemental strand, 36000495 - 36000456
Alignment:
| Q |
182 |
ggggtaattgatgttaagaaacttattaacaatctgatga |
221 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
36000495 |
ggggtaattgatgttaagaaacttattaacaatctgatga |
36000456 |
T |
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