View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19207_high_27 (Length: 227)

Name: NF19207_high_27
Description: NF19207
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19207_high_27
NF19207_high_27
[»] chr7 (3 HSPs)
chr7 (1-225)||(46129587-46129812)
chr7 (1-227)||(46702372-46702598)
chr7 (1-225)||(46123560-46123790)


Alignment Details
Target: chr7 (Bit Score: 198; Significance: 1e-108; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 46129587 - 46129812
Alignment:
Q  1 ctactgtcagggggtatgaatgtagtcgttgtattttacctggggtgttttactcgtttcttatgttatgcctaaattctatgatgccactgtgtattgt 100  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46129587 ctactgtcagggggtatgaatgtagtggttgtattttacctggggtgttttactcgtttcttatgttatgcctaaattctatgatgccactgtgtattgt 46129686  T
Q  101 cctcatctagattacttttaatgaatcaaagtgttgcacattatataatctataggtgtatgtgttttcctaaatcatgatgtggtgcacataagttctt 200  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  46129687 cctcatctagattacttttaatgaatcaaagtgttacacattatataatctataggcgtatgtgttttcctaaatcatgatgtggtgcacataagttctt 46129786  T
Q  201 aatagttaaccaaa-tttgaacattt 225  Q
    |||  ||||||||| |||||||||||    
T  46129787 aatttttaaccaaattttgaacattt 46129812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 46702372 - 46702598
Alignment:
Q  1 ctactgtcagggggtatgaatgtagtcgttgtattttacctggggtgttttactcgtttcttatgtt-atgcctaaattctatgatgccactgtgtattg 99  Q
    ||||||||||||||||||||||||||| || ||||||| |||||||||  ||||||||||||||||| |||||||||||  | ||||||||| |||| ||    
T  46702372 ctactgtcagggggtatgaatgtagtcattatattttatctggggtgtaatactcgtttcttatgtttatgcctaaatta-acgatgccactatgtaatg 46702470  T
Q  100 tcctcatctagattacttttaatgaatcaaagtgttgcacattatataatctataggtgtatgtgttttcctaaatcatgatgtggtgcacataagttct 199  Q
    ||||||||||||||||||||||| || ||||||||| ||| |||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  46702471 tcctcatctagattacttttaataaaacaaagtgttacacgttatgtaatctataggtgtatgtgttttcctaaatcatgatgtagtgcacataagttct 46702570  T
Q  200 taatagttaaccaaatttgaacatttat 227  Q
    |||| |||||||||||||||||||||||    
T  46702571 taattgttaaccaaatttgaacatttat 46702598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 46123560 - 46123790
Alignment:
Q  1 ctactgtcagggggtatgaatgtagtcgttgtattttacctggggtgttttactcgt-ttcttatgttatgcctaaattctatgatgccactgtgtattg 99  Q
    ||||| |||||||||||||||||| || || |||||||  |||| |||  ||||| | |||| |||| ||||||||||| |||||| ||||||||||  |    
T  46123560 ctactatcagggggtatgaatgtaatcattatattttatttgggatgtaatactcttcttctaatgtgatgcctaaattatatgataccactgtgtaacg 46123659  T
Q  100 tcctcatctagattacttttaatgaatcaaagtgttgcacat--tatataatctataggtgta--tgtgttttcctaaatcatgatgtggtgcacataag 195  Q
    ||||| || || ||||||||||  ||  ||||| ||  ||||  |||||||  ||   |||||  ||||||| ||||||||||||||| || | ||||||    
T  46123660 tcctcctcgagtttacttttaaaaaaaaaaagtattatacattgtatataacatagtagtgtatgtgtgtttccctaaatcatgatgtagttctcataag 46123759  T
Q  196 ttcttaatagttaaccaaa-tttgaacattt 225  Q
    ||||||||  ||||||||| |||||||||||    
T  46123760 ttcttaatttttaaccaaattttgaacattt 46123790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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