View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19207_high_29 (Length: 204)
Name: NF19207_high_29
Description: NF19207
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19207_high_29 |
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Alignment Details
Target: chr8 (Bit Score: 103; Significance: 2e-51; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 13 - 177
Target Start/End: Complemental strand, 23699834 - 23699668
Alignment:
| Q |
13 |
aagaaaatcaaac-ccttaacattgtagatattgcaaaatagatacccaaaggaactactaaccacatgtacataacgattcgcaagagatggatacagg |
111 |
Q |
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| T |
23699834 |
aagaaaatcaaaatccttaccattgtagatatctcaaaatagatacccaaaggaactactaaccacatgtacgtaacgattcacaagagatggatacacg |
23699735 |
T |
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| Q |
112 |
agaagagattcacaaattcgcgtagagaaatcagtggagatacaaattc-atctcagagccgttaga |
177 |
Q |
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| T |
23699734 |
agaagagattcgcaaattcgtgtacagaaatcagtagagatacaaattcgatctcagagccggtaga |
23699668 |
T |
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Target: chr4 (Bit Score: 74; Significance: 4e-34; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 22 - 185
Target Start/End: Original strand, 18203246 - 18203410
Alignment:
| Q |
22 |
aaacccttaacattgtagatattgcaaaatagatacccaaaggaactactaaccacatgtacataacgattcgcaagagatggatacaggaga-agagat |
120 |
Q |
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||||||| |||||||||| |||||||||||||||||||||||||||||| ||||||| || |||||||||| |||||||||||||||||| ||||| |
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| T |
18203246 |
aaaccctaaacattgtagctattgcaaaatagatacccaaaggaactacataccacatata-tgaacgattcgcgagagatggatacaggagattgagat |
18203344 |
T |
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| Q |
121 |
tcacaaattcgcgtagagaaatcagtggagatacaaatt-catctcagagccgttagaatagaatt |
185 |
Q |
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||||||||||| || ||||||||| | |||||||||||| ||||||| |||| || |||| ||||| |
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| T |
18203345 |
tcacaaattcgtgtggagaaatcaatagagatacaaattccatctcaaagccatttgaatggaatt |
18203410 |
T |
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