View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19207_high_3 (Length: 590)
Name: NF19207_high_3
Description: NF19207
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19207_high_3 |
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Alignment Details
Target: chr7 (Bit Score: 563; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 563; E-Value: 0
Query Start/End: Original strand, 18 - 580
Target Start/End: Original strand, 46702559 - 46703121
Alignment:
| Q |
18 |
cacataagttcttaattgttaaccaaatttgaacatttattgacacatctgtgttcaggccacatctatctaattgataaggtgaagcaggcagatgttg |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46702559 |
cacataagttcttaattgttaaccaaatttgaacatttattgacacatctgtgttcaggccacatctatctaattgataaggtgaagcaggcagatgttg |
46702658 |
T |
|
| Q |
118 |
tcccgcggtttgtgcagtttttgacaagggatgatatgccccaactgcaggtatgaatctttttctatcaagtaattcctgaatgagatgattttgacct |
217 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46702659 |
tcccgcggtttgtgcagtttttgacaagggatgatatgccccaactgcaggtatgaatctttttctatcaagtaattcctgaatgagatgattttgacct |
46702758 |
T |
|
| Q |
218 |
cactcacagatattatatctgcagtccatggcagcatggacactgaccaatatcgcggcgggattgtctgagcatacaaatactgtgattgaacatggtg |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46702759 |
cactcacagatattatatctgcagtccatggcagcatggacactgaccaatatcgcggcgggattgtctgagcatacaaatactgtgattgaacatggtg |
46702858 |
T |
|
| Q |
318 |
ctgttcctctgcttgtgcagcttctgagctctggttgtgatgacggcaaagaacaggtgatgtcttcttcaatctcttggcataattgcattgagaaaac |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46702859 |
ctgttcctctgcttgtgcagcttctgagctctggttgtgatgacggcaaagaacaggtgatgtcttcttcaatctcttggcataattgcattgagaaaac |
46702958 |
T |
|
| Q |
418 |
cattgtgtatgcatgtatctatgtatgtgttgatcccttacagaatttcaatgtctcatgtattgaacaggcattatgggcattaggtaatattgctggc |
517 |
Q |
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| T |
46702959 |
cattgtgtatgcatgtatctatgtatgtgttgatcccttacagaatttcaatgtctcatgtattgaacaggcattatgggcattaggtaatattgctggc |
46703058 |
T |
|
| Q |
518 |
aattccctgaccgcaagggatcttgttttaaataatggtgcactttctccattattgtctctg |
580 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46703059 |
aattccctgaccgcaagggatcttgttttaaataatggtgcactttctccattattgtctctg |
46703121 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 18 - 580
Target Start/End: Original strand, 46129774 - 46130337
Alignment:
| Q |
18 |
cacataagttcttaattgttaaccaaattt-gaacatttattgacacatctgtgttcaggccacatctatctaattgataaggtgaagcaggcagatgtt |
116 |
Q |
| |
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||||||||||||||||| |||||||||||| |||||||| ||||||||| ||||||||| ||||| |||||||||||| |||||||||||||||||| |
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| T |
46129774 |
cacataagttcttaatttttaaccaaattttgaacatttgccgacacatctctgttcaggctacatccgtctaattgataaagtgaagcaggcagatgtt |
46129873 |
T |
|
| Q |
117 |
gtcccgcggtttgtgcagtttttgacaagggatgatatgccccaactgcaggtatgaatctttttctatcaagtaattcctgaatgagatgattttgacc |
216 |
Q |
| |
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|||| ||| |||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
46129874 |
gtccggcgatttgtgcagtttttgaaaagggatgatatgccccaactgcaggtatgaatatttttctatcaagtaattcctgaatgagatgattttgacc |
46129973 |
T |
|
| Q |
217 |
tcactcacagatattatatctgcagtccatggcagcatggacactgaccaatatcgcggcgggattgtctgagcatacaaatactgtgattgaacatggt |
316 |
Q |
| |
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||||||||| |||||||||||||||||||||||||||||||| |||| |||| || | |||||||||||||||||||||||||||||||||||||||||| |
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| T |
46129974 |
tcactcacaaatattatatctgcagtccatggcagcatggactctgatcaatgtcaccgcgggattgtctgagcatacaaatactgtgattgaacatggt |
46130073 |
T |
|
| Q |
317 |
gctgttcctctgcttgtgcagcttctgagctctggttgtgatgacggcaaagaacaggtgatgtcttcttcaatctcttggcataattgcattgagaaaa |
416 |
Q |
| |
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||||||||||| |||||| ||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||| |||||||||||| ||||||||| |
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| T |
46130074 |
gctgttcctctccttgtgaagcttctgagctctggtagtgatgacggcaaagaacaggtgatgtcttcctcaatctcgtggcataattgctttgagaaaa |
46130173 |
T |
|
| Q |
417 |
ccattgtgtatgcatgtatctatgtatgtgttgatcccttacagaatttcaatgtctcatgtattgaacaggcattatgggcattaggtaatattgctgg |
516 |
Q |
| |
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| || ||||||||||||||||||||||| || |||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46130174 |
ctatcgtgtatgcatgtatctatgtatgagtcgatcgcttacacaatttcaatgtctcatgtattgaacaggcattatgggcattaggtaatattgctgg |
46130273 |
T |
|
| Q |
517 |
caattccctgaccgcaagggatcttgttttaaataatggtgcactttctccattattgtctctg |
580 |
Q |
| |
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| ||| |||||| | |||| ||||||||||| ||||||||||| ||||||||||||||||| |
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|
| T |
46130274 |
tagttctgagaccgcgaaggatgttgttttaaatcatggtgcacttcctccattattgtctctg |
46130337 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 20 - 577
Target Start/End: Original strand, 46123754 - 46124325
Alignment:
| Q |
20 |
cataagttcttaattgttaaccaaattt-gaacatttattgacacatctgtgttcaggccacatctatctaattgataaggtgaagcaggcagatgttgt |
118 |
Q |
| |
|
||||||||||||||| |||||||||||| |||||||| ||||||||| ||||||||| ||||| |||||||||||||||||||| || | |||||| |
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| T |
46123754 |
cataagttcttaatttttaaccaaattttgaacatttgccgacacatctctgttcaggctacatccctctaattgataaggtgaagcgagctggtgttgt |
46123853 |
T |
|
| Q |
119 |
cccgcggtttgtgcagtttttgacaagggatgatatgccccaactgcaggtatgaatctttttctatcaagtaattcctgaatgagatgattttgacctc |
218 |
Q |
| |
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|| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||| |||||||||||||| |
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| T |
46123854 |
cctgcggtttgtgcagtttttgacaagggatgatatgccccaattgcaggtatgaatctttttctatcaagtgattcctgaatgtaatgattttgacctc |
46123953 |
T |
|
| Q |
219 |
actcacaga-------------tattatatctgcagtccatggcagcatggacactgaccaatatcgcggcgggattgtctgagcatacaaatactgtga |
305 |
Q |
| |
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||||||| | ||||||||||||||||||||||||||||||| |||| |||| || | |||||||||||||| |||||||||||||||| |
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| T |
46123954 |
actcacaaaatatgttgtacaatattatatctgcagtccatggcagcatggactctgatcaatgtcactgcgggattgtctgaacatacaaatactgtga |
46124053 |
T |
|
| Q |
306 |
ttgaacatggtgctgttcctctgcttgtgcagcttctgagctctggttgtgatgacggcaaagaacaggtgatgtcttcttcaatctcttggcataattg |
405 |
Q |
| |
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||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||| |||||||| ||||||||||| |
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|
| T |
46124054 |
ttgaacatggtgctgttcctctgcttgtgaagcttctgagctctggcagtgatgacggcaaagaacaggtgatgtcttcctcaatctcgtggcataattg |
46124153 |
T |
|
| Q |
406 |
cattgagaaaaccattgtgtatgcatgtatctatgtatgtgttgatcccttacagaatttcaatgtctcatgtattgaacaggcattatgggcattaggt |
505 |
Q |
| |
|
| |||||||||| || ||||||||||||||||||||||| || |||| |||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
46124154 |
ctttgagaaaactatcgtgtatgcatgtatctatgtatgagtcgatcgcttacacaatttcaatgtctcatgtattgaacaggcattatgggcattaggt |
46124253 |
T |
|
| Q |
506 |
aatattgctggcaattccctgaccgcaagggatcttgttttaaataatggtgcactttctccattattgtct |
577 |
Q |
| |
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||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| |||||||| |
|
|
| T |
46124254 |
aatattgctggcaattccctgaccgcaagggatattgttttaaatcatggtgcactttctccactattgtct |
46124325 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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