View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19207_high_5 (Length: 516)

Name: NF19207_high_5
Description: NF19207
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19207_high_5
NF19207_high_5
[»] scaffold0023 (1 HSPs)
scaffold0023 (10-497)||(113771-114258)
[»] chr8 (1 HSPs)
chr8 (11-64)||(21305900-21305953)
[»] scaffold0001 (1 HSPs)
scaffold0001 (11-61)||(148809-148859)
[»] chr7 (1 HSPs)
chr7 (19-61)||(5471194-5471236)
[»] chr5 (7 HSPs)
chr5 (11-69)||(33734332-33734390)
chr5 (11-61)||(33904424-33904474)
chr5 (11-63)||(33679844-33679896)
chr5 (11-69)||(33821662-33821720)
chr5 (11-63)||(33698561-33698613)
chr5 (11-63)||(33865915-33865967)
chr5 (11-60)||(33762794-33762843)
[»] scaffold0247 (1 HSPs)
scaffold0247 (11-60)||(22155-22204)
[»] scaffold0193 (1 HSPs)
scaffold0193 (11-90)||(25189-25268)
[»] chr4 (1 HSPs)
chr4 (370-431)||(6998984-6999046)
[»] chr2 (1 HSPs)
chr2 (370-431)||(15938767-15938828)


Alignment Details
Target: scaffold0023 (Bit Score: 455; Significance: 0; HSPs: 1)
Name: scaffold0023
Description:

Target: scaffold0023; HSP #1
Raw Score: 455; E-Value: 0
Query Start/End: Original strand, 10 - 497
Target Start/End: Complemental strand, 114258 - 113771
Alignment:
Q  10 gacatcatcagctgttctacccggaagccttcccgcaatcaatgaccatctatattatatttatccaatatatgagtaagtaaattaattgaaatattat 109  Q
    |||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  114258 gacatcattagctgttctagccggaagccttcccgcaatcaatgaccatctatattatatttatccaatatatgagtaagtaaattaattgaaatattat 114159  T
Q  110 ctaaataggaagaatttaaaagtactctctcccaatctcccaaagtgaaaaactcgcttgaaaagaaaaaactgttacaaaattaataacaaattctact 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  114158 ctaaataggaagaatttaaaagtactctctcccaatctcccaaagtgaaaaactcgcttgaaaagaaaaaactgttacaaaattaataacaaattctact 114059  T
Q  210 ttccttataaaaagcaatccaattaaatcctctaattattccaacttgcatcactctcaagtcattatcgctcactctatatttatgatatagtgaatat 309  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  114058 ttccttataaaaagcaatccaattaaatcctctaattattccaacttgcatcactctcaagtcattatcgctcactctatatttatgatatagtgaatat 113959  T
Q  310 agggagaggattgtctcaagtgacattagagacatgtttatttatagccttttatttggcatgagagagaaagagaaaaagggaaaaggggaatttaagg 409  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  113958 agggagaggattgtctcaagtgacattagagacatgtttatttatagccttttatttggcatgagagagaaagagaaaaagggaaaaggagaatttaagg 113859  T
Q  410 gtgagggtttctccacttgagacagttgtgnnnnnnnccttaatacaatctattcctatgaatatatcaatatttaataagagtgagg 497  Q
    ||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  113858 gtgagggtttctccacttgagacagttgtggaaaaaaccttaatacaatctattcctatgaatatatcaatatttaataagagtgagg 113771  T

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Target: chr8 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 11 - 64
Target Start/End: Original strand, 21305900 - 21305953
Alignment:
Q  11 acatcatcagctgttctacccggaagccttcccgcaatcaatgaccatctatat 64  Q
    ||||||| |||||||||||||||||||||||| |||||||||||||||||||||    
T  21305900 acatcattagctgttctacccggaagccttccagcaatcaatgaccatctatat 21305953  T

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Target: scaffold0001 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 11 - 61
Target Start/End: Original strand, 148809 - 148859
Alignment:
Q  11 acatcatcagctgttctacccggaagccttcccgcaatcaatgaccatcta 61  Q
    ||||||| ||||||||| |||||||||||||| ||||||||||||||||||    
T  148809 acatcattagctgttcttcccggaagccttccagcaatcaatgaccatcta 148859  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 19 - 61
Target Start/End: Complemental strand, 5471236 - 5471194
Alignment:
Q  19 agctgttctacccggaagccttcccgcaatcaatgaccatcta 61  Q
    |||||||||||||||||||||||| ||||||||||||||||||    
T  5471236 agctgttctacccggaagccttccagcaatcaatgaccatcta 5471194  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 11 - 69
Target Start/End: Original strand, 33734332 - 33734390
Alignment:
Q  11 acatcatcagctgttctacccggaagccttcccgcaatcaatgaccatctatattatat 69  Q
    ||||||| ||| |||||||| ||||||||| | ||||||||||||||||||||||||||    
T  33734332 acatcattagcagttctaccaggaagccttgcagcaatcaatgaccatctatattatat 33734390  T

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Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 11 - 61
Target Start/End: Original strand, 33904424 - 33904474
Alignment:
Q  11 acatcatcagctgttctacccggaagccttcccgcaatcaatgaccatcta 61  Q
    ||||||| |||||||||||||||||||||| | ||||||||||||||||||    
T  33904424 acatcattagctgttctacccggaagccttgcagcaatcaatgaccatcta 33904474  T

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Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 11 - 63
Target Start/End: Original strand, 33679844 - 33679896
Alignment:
Q  11 acatcatcagctgttctacccggaagccttcccgcaatcaatgaccatctata 63  Q
    ||||||| |||||||||||||||||||||  | ||||||||||||||||||||    
T  33679844 acatcattagctgttctacccggaagcctcgcagcaatcaatgaccatctata 33679896  T

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Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 11 - 69
Target Start/End: Original strand, 33821662 - 33821720
Alignment:
Q  11 acatcatcagctgttctacccggaagccttcccgcaatcaatgaccatctatattatat 69  Q
    ||||||| ||| |||||||  ||||||||| | ||||||||||||||||||||||||||    
T  33821662 acatcattagccgttctactaggaagccttgcagcaatcaatgaccatctatattatat 33821720  T

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Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 11 - 63
Target Start/End: Original strand, 33698561 - 33698613
Alignment:
Q  11 acatcatcagctgttctacccggaagccttcccgcaatcaatgaccatctata 63  Q
    ||||||| |||||| ||||||||||||||| | |||||||| |||||||||||    
T  33698561 acatcattagctgtcctacccggaagccttgcagcaatcaaagaccatctata 33698613  T

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Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 11 - 63
Target Start/End: Original strand, 33865915 - 33865967
Alignment:
Q  11 acatcatcagctgttctacccggaagccttcccgcaatcaatgaccatctata 63  Q
    ||||||| ||||||||||||||| || ||| | ||||||||||||||||||||    
T  33865915 acatcattagctgttctacccgggagtcttgcagcaatcaatgaccatctata 33865967  T

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Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 11 - 60
Target Start/End: Original strand, 33762794 - 33762843
Alignment:
Q  11 acatcatcagctgttctacccggaagccttcccgcaatcaatgaccatct 60  Q
    |||||||  ||||||||||| ||||||||| | |||||||||||||||||    
T  33762794 acatcattcgctgttctaccgggaagccttgcagcaatcaatgaccatct 33762843  T

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Target: scaffold0247 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0247
Description:

Target: scaffold0247; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 11 - 60
Target Start/End: Complemental strand, 22204 - 22155
Alignment:
Q  11 acatcatcagctgttctacccggaagccttcccgcaatcaatgaccatct 60  Q
    ||||||| |||||||||||| ||||||||||| |||||||||||||||||    
T  22204 acatcattagctgttctacctggaagccttccagcaatcaatgaccatct 22155  T

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Target: scaffold0193 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: scaffold0193
Description:

Target: scaffold0193; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 11 - 90
Target Start/End: Complemental strand, 25268 - 25189
Alignment:
Q  11 acatcatcagctgttctacccggaagccttcccgcaatcaatgaccatctatattatatttatccaatatatgagtaagt 90  Q
    ||||||| ||||| ||||||| |||| ||| | |||||||||| ||||||||||||||| ||||  | ||||||||||||    
T  25268 acatcattagctgatctaccctgaagtcttgcagcaatcaatgtccatctatattatatgtatcatacatatgagtaagt 25189  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 370 - 431
Target Start/End: Complemental strand, 6999046 - 6998984
Alignment:
Q  370 atgagagagaaagagaaaaagggaaaaggg-gaatttaagggtgagggtttctccacttgaga 431  Q
    |||||||||||||||||||| || |||||| |||||||||||||  | |||||||||||||||    
T  6999046 atgagagagaaagagaaaaaagggaaagggtgaatttaagggtggtgatttctccacttgaga 6998984  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 370 - 431
Target Start/End: Original strand, 15938767 - 15938828
Alignment:
Q  370 atgagagagaaagagaaaaagggaaaaggggaatttaagggtgagggtttctccacttgaga 431  Q
    |||||||||||||||||| || |||||    |||||||||||| || |||||||||||||||    
T  15938767 atgagagagaaagagaaagagtgaaaaaattaatttaagggtggggatttctccacttgaga 15938828  T

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