View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19207_high_8 (Length: 390)
Name: NF19207_high_8
Description: NF19207
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19207_high_8 |
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Alignment Details
Target: chr7 (Bit Score: 225; Significance: 1e-124; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 128 - 379
Target Start/End: Complemental strand, 38860377 - 38860121
Alignment:
| Q |
128 |
ctaacaaaatatagtaatttcattaaattattattagaaagacctcttaatcttaaagtccgccttata-----ctaatatatcttgagccaatcatgca |
222 |
Q |
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| T |
38860377 |
ctaacaaaatatagtaatttcattaaattattattagaaagacctcttaatcttaaagtccgccttatattatactaatatatcttgagccaatcatgca |
38860278 |
T |
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| Q |
223 |
tggtgatggatattcttgcatcgatgtcaaattggagtatgcgaccgctacatagtggtgaaatttaaaaaggtgaatttggcttaaggtttctatttct |
322 |
Q |
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| T |
38860277 |
tggtgatggatagtcttgcatcgatgtcaaattggagtatgcgaccgctacatagtggtgaaatttaaaaaggtgaatttggcttaaggtttctatttct |
38860178 |
T |
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| Q |
323 |
tcagcaatcttaagtggacgaaagtttattttatgaaatgatgtgtatatagtgatg |
379 |
Q |
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| T |
38860177 |
tcagcaatcttaagtggacgaaagtttattttatgaaataatgtgtatatagagatg |
38860121 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 11 - 43
Target Start/End: Complemental strand, 38860485 - 38860453
Alignment:
| Q |
11 |
cacagacaaaacacaaaagaaaaatcaaatttc |
43 |
Q |
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| T |
38860485 |
cacagacaaaacacaaaagaaaaatcaaatttc |
38860453 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 80 - 113
Target Start/End: Complemental strand, 38860436 - 38860403
Alignment:
| Q |
80 |
aaaaaattgatttagaagggtgattttgcattct |
113 |
Q |
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| T |
38860436 |
aaaaaattgatttagaagggtaattttgcattct |
38860403 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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