View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19207_high_9 (Length: 370)
Name: NF19207_high_9
Description: NF19207
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19207_high_9 |
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Alignment Details
Target: chr3 (Bit Score: 252; Significance: 1e-140; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 23 - 352
Target Start/End: Original strand, 35138061 - 35138388
Alignment:
| Q |
23 |
tatgaaagaaagaaattgaaagaaatattttccattatacacaaataagttgatttcttaaaaataaattaatgatggtaagggtgataaactatgtttt |
122 |
Q |
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| T |
35138061 |
tatgaaagaaagaaattgaaagaaatattttccattatacacaaataagttgattttttaaaaataaactaatggtggtaagggtgaca--ctatgtttt |
35138158 |
T |
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| Q |
123 |
tgtttctatctttctccaaatatggaagactccatttatcttgagaaactaagaagaagatcctagttagtgtacaaatggatttgattnnnnnnnnngt |
222 |
Q |
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| T |
35138159 |
tgtttctatctttctccaaatatggaagactccattgatcttgaaaaactaagaagaagatcctagttagtgtacaaatggatttgattaaaaaaaaagt |
35138258 |
T |
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| Q |
223 |
ttgcgaatgaatcaattgagatttaggtggacgttgacataataagttatatggatgaatggatctttcggcataaaaaatcaagtattatacaagtgtt |
322 |
Q |
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|| |||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35138259 |
ttacgaatgaatcaattgaaatttaggtggacgttgacagaataagttatatggatgaatggatctttcggcataaaaaatcaagtattatacaagtgtt |
35138358 |
T |
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| Q |
323 |
ctatgccaatgacctttcaagcaaaaagtg |
352 |
Q |
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|||||||||||||| ||||||||||||||| |
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| T |
35138359 |
ctatgccaatgacccttcaagcaaaaagtg |
35138388 |
T |
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