View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19207_low_11 (Length: 354)
Name: NF19207_low_11
Description: NF19207
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19207_low_11 |
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Alignment Details
Target: chr5 (Bit Score: 333; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 1 - 337
Target Start/End: Original strand, 39553849 - 39554185
Alignment:
| Q |
1 |
atacatgtcataaattgaaggatggatggaaggtgggcgtcgtggggtcagaagtgaccgtcgaaaacaaggttgcgttgttgggatcaaagacttgtta |
100 |
Q |
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| T |
39553849 |
atacatgtcataaattgaaggatggatggaaggtgggcgtcgtggggtcagaagtgaccgtcgaaaacaaggttgcgttgttgggatcaaagacttgtta |
39553948 |
T |
|
| Q |
101 |
tcattgggccgagctatctcggcccatgatacaaggaacatgtttgcagaataggcatcagctatacgatggtcaaaagtgcaagccactactaaaccac |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39553949 |
tcattgggccgagctatctcggcccatgatacaaggaacatgtttgcagaataggcatcagctatacgatggtcaaaagtgcaagccactactaaaccac |
39554048 |
T |
|
| Q |
201 |
cacatttcatccaagttgcctgcatagtaacgatgataattaaaacactataaataatactaataaatttgtagacatgttgcattgatttttaaatgaa |
300 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39554049 |
cacatttcatccaagttgcctgcatagtaacaatgataattaaaacactataaataatactaataaatttgtagacatgttgcattgatttttaaatgaa |
39554148 |
T |
|
| Q |
301 |
taatattttacctgaacagcaagcacaccatgtttct |
337 |
Q |
| |
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| T |
39554149 |
taatattttacctgaacagcaagcacaccatgtttct |
39554185 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 1 - 249
Target Start/End: Original strand, 39543830 - 39544078
Alignment:
| Q |
1 |
atacatgtcataaattgaaggatggatggaaggtgggcgtcgtggggtcagaagtgaccgtcgaaaacaaggttgcgttgttgggatcaaagacttgtta |
100 |
Q |
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| T |
39543830 |
atacatgtcataaagtgaaggatgtatggaaggtgggcgtcgtggggtcataagtgaccgtctaaaacaaggttgcattgttgggatcaaagacttgtta |
39543929 |
T |
|
| Q |
101 |
tcattgggccgagctatctcggcccatgatacaaggaacatgtttgcagaataggcatcagctatacgatggtcaaaagtgcaagccactactaaaccac |
200 |
Q |
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| T |
39543930 |
ttgttgggtcgagctatctcggcccatgatacaaggaacatgtttgcagaatatgcgtccgctatacgatggtcaaaagtgcaagccactactaatccac |
39544029 |
T |
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| Q |
201 |
cacatttcatccaagttgcctgcatagtaacgatgataattaaaacact |
249 |
Q |
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||||||||||||| |||| |||||||||||| |||| ||||||||||| |
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| T |
39544030 |
cacatttcatccatgttgtctgcatagtaacaatgacgattaaaacact |
39544078 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 2 - 224
Target Start/End: Original strand, 39586960 - 39587182
Alignment:
| Q |
2 |
tacatgtcataaattgaaggatggatggaaggtgggcgtcgtggggtcagaagtgaccgtcgaaaacaaggttgcgttgttgggatcaaagacttgttat |
101 |
Q |
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||||||||||| | |||||||||||||||||||||| ||| |||||||||||| |||| | ||||||||||||| ||||||||||||||||||||||||| |
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| T |
39586960 |
tacatgtcatagagtgaaggatggatggaaggtgggtgtcttggggtcagaagggacctttgaaaacaaggttgtgttgttgggatcaaagacttgttat |
39587059 |
T |
|
| Q |
102 |
cattgggccgagctatctcggcccatgatacaaggaacatgtttgcagaataggcatcagctatacgatggtcaaaagtgcaagccactactaaaccacc |
201 |
Q |
| |
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| | || ||||||||||||||||||||||| |||||||||||||||||||| || ||||| |||||||||||| |||| ||||||||||| ||||| |
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| T |
39587060 |
tgctcgatcgggctatctcggcccatgatacaagaaacatgtttgcagaataggcgtcggctattcgatggtcaaaattgcacgccactactaacccacc |
39587159 |
T |
|
| Q |
202 |
acatttcatccaagttgcctgca |
224 |
Q |
| |
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||||||||||||||||||||||| |
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| T |
39587160 |
acatttcatccaagttgcctgca |
39587182 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 116 - 227
Target Start/End: Original strand, 17503782 - 17503893
Alignment:
| Q |
116 |
atctcggcccatgatacaaggaacatgtttgcagaataggcatcagctatacgatggtcaaaagtgcaagccactactaaaccaccacatttcatccaag |
215 |
Q |
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||||||||||||||||| ||||||||||||| ||||| ||||| ||||| ||||| ||||| ||||| |||||||||| |||||||| || | ||| |
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| T |
17503782 |
atctcggcccatgatactaggaacatgtttgttgaatatgcatctgctatgcgatgatcaaatgtgcatgccactactatcccaccacactttaatgaag |
17503881 |
T |
|
| Q |
216 |
ttgcctgcatag |
227 |
Q |
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| T |
17503882 |
ttgcctgcatag |
17503893 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 111 - 192
Target Start/End: Original strand, 17475654 - 17475735
Alignment:
| Q |
111 |
gagctatctcggcccatgatacaaggaacatgtttgcagaataggcatcagctatacgatggtcaaaagtgcaagccactac |
192 |
Q |
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|||| ||||||||||||||||| | ||||||||||| || |||||||| ||||| ||||| ||||| ||||| |||||||| |
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| T |
17475654 |
gagccatctcggcccatgatactaagaacatgtttgttgagtaggcatctgctatgcgatgatcaaatgtgcatgccactac |
17475735 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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