View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19207_low_14 (Length: 310)
Name: NF19207_low_14
Description: NF19207
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19207_low_14 |
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Alignment Details
Target: chr8 (Bit Score: 262; Significance: 1e-146; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 7 - 291
Target Start/End: Complemental strand, 29261592 - 29261307
Alignment:
| Q |
7 |
gaagactaaacataaaaagggaggggatgatatcttgatagataacttgggataaa-ccaaattttatgagagtttatgaaagtagaaaatagaaacagt |
105 |
Q |
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| T |
29261592 |
gaagactaaacataaaaagggaggggatgatatcttgatagataacttgggctaaaaccaaatattatgagagtttatgaaagtagaaaatagaaacagt |
29261493 |
T |
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| Q |
106 |
tacaagagctgcaaagatccttaactttttattttgagaatcaagatacagcaataactctaacgatcacagtgttcttacttcaagttcatgtataatc |
205 |
Q |
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| T |
29261492 |
tacaagacctgcaaagatccttaactttttattttgagaatcaagatacagcaataactctaacgatcacattgttcttacttcaagttcatgtataatc |
29261393 |
T |
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| Q |
206 |
atcacatataacaactaacattatcattacaaatttataaattgaaattagaattgtaataatgattgacatgtcgaggattgtgc |
291 |
Q |
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| T |
29261392 |
atcacatataacaactaacattatcattacaaatttataaattgaaattagaattgtaataatgattgacatgtcgaggattgtgc |
29261307 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 186; Significance: 1e-101; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 31 - 287
Target Start/End: Original strand, 26706883 - 26707139
Alignment:
| Q |
31 |
ggatgatatcttgatagataacttgggataaa-ccaaattttatgagagtttatgaaagtagaaaatagaaacagttacaagagctgcaaagatccttaa |
129 |
Q |
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| T |
26706883 |
ggatgatatcttgatagataacctgggctaaaaccaaatattatgagaatt-atgaaagtagaaaatagaaacggttacaagacctgcaaagatccttaa |
26706981 |
T |
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| Q |
130 |
ctttttattttgagaatcaagatacagcaataactctaacgatcacagtgttcttacttcaagttcatgtataatcatcacatataacaactaacattat |
229 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||| | | |||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
26706982 |
ctttttattttgagaatcaagatacagcaatagctctaacgataatattgttcttacttcaagttcatgtataatcatcacatataccaactaacattat |
26707081 |
T |
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| Q |
230 |
cattacaaatttataaattgaaattagaattgtaataatgattgacatgtcgaggatt |
287 |
Q |
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| T |
26707082 |
cattacaaatttataaagtgaaattagaattgcaacaatgattgacatgtcgaggatt |
26707139 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 33
Target Start/End: Original strand, 26706819 - 26706847
Alignment:
| Q |
5 |
atgaagactaaacataaaaagggagggga |
33 |
Q |
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| T |
26706819 |
atgaagactaaacataaaaagggagggga |
26706847 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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