View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19207_low_16 (Length: 281)
Name: NF19207_low_16
Description: NF19207
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19207_low_16 |
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Alignment Details
Target: chr5 (Bit Score: 260; Significance: 1e-145; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 1 - 264
Target Start/End: Original strand, 16828308 - 16828571
Alignment:
| Q |
1 |
acaagctcatgtaccttcactaaaaccaacaaaatgtaatgaatccactccatgtgaagaagttaatggtggaaaagcagcaatgttatttgctggtcta |
100 |
Q |
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| T |
16828308 |
acaagctcatgtaccttcactaaaaccaacaaaatgtaatgaatccactccatgtgaagaagttaatggtggaaaagcagcaatgttatttgctggtcta |
16828407 |
T |
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| Q |
101 |
tatctagtagcacttggagttggaggaataaaaggatctttaccagttcatggtggtgaacaatttgatgaaactacaccaaatggaaggaagcaaagat |
200 |
Q |
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| T |
16828408 |
tatctagtagcacttggagttggaggaataaaaggatctttaccagttcatggtggtgaacaatttgatgaagctacaccaaatggaaggaagcaaagat |
16828507 |
T |
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| Q |
201 |
caactttcttcaactactttgttttttgtctatcatgtggtgcccttattgcagttacttttgt |
264 |
Q |
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| T |
16828508 |
caactttcttcaactactttgttttttgtctatcatgtggtgcccttattgcagttacttttgt |
16828571 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 59 - 264
Target Start/End: Complemental strand, 25172021 - 25171816
Alignment:
| Q |
59 |
gaagttaatggtggaaaagcagcaatgttatttgctggtctatatctagtagcacttggagttggaggaataaaaggatctttaccagttcatggtggtg |
158 |
Q |
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| T |
25172021 |
gaagttcatggtgcaaaagcattaatgctatttggtggactatacctagttgcacttggagttggaggaattaagggatcattggcaccacatggtgctg |
25171922 |
T |
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| Q |
159 |
aacaatttgatgaaactacaccaaatggaaggaagcaaagatcaactttcttcaactactttgttttttgtctatcatgtggtgcccttattgcagttac |
258 |
Q |
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| T |
25171921 |
agcaatttgatgaggacaatgtatctggaagaaagaatagatcaactttctttaactacttcatctttagcttagcatgtggtgcacttattgcagttac |
25171822 |
T |
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| Q |
259 |
ttttgt |
264 |
Q |
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|||||| |
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| T |
25171821 |
ttttgt |
25171816 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 68 - 265
Target Start/End: Original strand, 44611292 - 44611489
Alignment:
| Q |
68 |
ggtggaaaagcagcaatgttatttgctggtctatatctagtagcacttggagttggaggaataaaaggatctttaccagttcatggtggtgaacaatttg |
167 |
Q |
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|||||||||||||| ||| ||||||| || || ||||| || ||||||||||| || ||||||||||| || | || |||||| | ||||||||||| |
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| T |
44611292 |
ggtggaaaagcagctatgctatttgcaggcctctatcttgtggcacttggagtagggggaataaaaggttcacttcctcctcatggagctgaacaatttg |
44611391 |
T |
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| Q |
168 |
atgaaactacaccaaatggaaggaagcaaagatcaactttcttcaactactttgttttttgtctatcatgtggtgcccttattgcagttacttttgtg |
265 |
Q |
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| T |
44611392 |
atgagactacaccagaaggaagaaagaaaaggtctgaattttttaactactttgtcttcagcctgtcatgtggtgcattgtttgcagttacttttgtg |
44611489 |
T |
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