View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19207_low_2 (Length: 671)
Name: NF19207_low_2
Description: NF19207
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19207_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 568; Significance: 0; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 568; E-Value: 0
Query Start/End: Original strand, 15 - 661
Target Start/End: Original strand, 28887623 - 28888265
Alignment:
| Q |
15 |
atcagtttgtaactatattatcttactatgagatacctgtcatatcataagattatgtgtgtacatgtttgcacctttcagatataaatcattnnnnnnn |
114 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
28887623 |
atcagtttgtaactatattatcttactatgagatacctgtcatatcattagattatgtgtgtacatgtttgcacctttcagatataaatgattaaaaaaa |
28887722 |
T |
|
| Q |
115 |
tacgcttagaccacacttctaaaagaaatatgtgtgttttgttgcaacttacaacagattatgtagtcacnnnnnnntaaaatataaatcatcggaacaa |
214 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
28887723 |
tacgcttagaccacacttctaaaagaaatatgtgtgttttgttgcaacttacaacagattatgtagtcacaaaaaaataaaatataaatcatcggaacaa |
28887822 |
T |
|
| Q |
215 |
gagaaatatatattatgatggctaatttttccatcagtcacattgtcaaggataaagtactttttcattagcagcatttgaaacaagcagctatttgtag |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28887823 |
gagaaatatatattatgatggctaatttttccatcagtcacattgtcaaggataaagtactttttcattagcagcatttgaaacaagcagctatttgtag |
28887922 |
T |
|
| Q |
315 |
agaacaaaagtatataactctactaattaactatcaacactgatgtgatgtactcaatagaggtgatttcccttcatattgatttactttccctttgggg |
414 |
Q |
| |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28887923 |
agaacaaaagtatataactctactaa----ctatcaacactgatgtgatgtactcaatagaggtgatttcccttcatattgatttactttccctttgggg |
28888018 |
T |
|
| Q |
415 |
gaaaaaagagcccaagtgcatccctcagaagcattgcctctctttcactctcatctgtcttccagaccttgaattctaagggagaaaatgtggaatccaa |
514 |
Q |
| |
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| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
28888019 |
ggaaaaagagcccaagtgcatccctcagaagcattgcctctctttcactctcatctgtcttccagaccttgaaatctaagggagaaaatgtggaatccaa |
28888118 |
T |
|
| Q |
515 |
ttcgctccagtgttttagtacagacattggaaaaggcccttttgtttcactaccacgaatacctgaacaataccaaatggaaatatcaggattctccact |
614 |
Q |
| |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28888119 |
ttcgctccagtgtttgagtacagacattggaaaaggcccttttgtttcactaccacgaatacctgaacaataccaaatggaaatatcaggattctccact |
28888218 |
T |
|
| Q |
615 |
ccctttcttgctgctgaagaagtaactctaatattcacatcttcatc |
661 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28888219 |
ccctttcttgctgctgaagaagtaactctaatattcacatcttcatc |
28888265 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 161; E-Value: 2e-85
Query Start/End: Original strand, 276 - 623
Target Start/End: Original strand, 28897550 - 28897891
Alignment:
| Q |
276 |
ttttcattagcagcatttgaaacaagcagctatttgtagagaacaaaagtatataactctactaattaactatcaacactgatgtgatgt-actcaatag |
374 |
Q |
| |
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|||||| ||||||||||| ||||| ||||||| ||| || ||||||||||||||||| || |||||| |||| |||| ||||||| | | ||||| |
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| T |
28897550 |
ttttcaatagcagcatttcaaacaggcagctacttggtgaaaacaaaagtatataactatattaatta----tcaaaactg--gtgatgttattaaatag |
28897643 |
T |
|
| Q |
375 |
aggtgatttcccttcatattgatttactttccctttgggggaaaaaagagcccaagtgcatccctcagaagcattgcctctctttcactctcatctgtct |
474 |
Q |
| |
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|| |||||||||||||| |||| |||||||| | || ||| |||||| ||| |||||||||||||||||||||||||||||||||||| ||| |||||| |
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| T |
28897644 |
agatgatttcccttcattttgacttactttcacattaggg-aaaaaacagcttaagtgcatccctcagaagcattgcctctctttcactttcacctgtct |
28897742 |
T |
|
| Q |
475 |
tccagaccttgaattctaagggagaaaatgtggaatccaattcgctccagtgttttagtacagacattggaaaaggcccttttgtttcactaccacgaat |
574 |
Q |
| |
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||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| |||| ||||||||||||||||||| ||||| ||||||||| ||| |
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| T |
28897743 |
tccagaccttgaagtctaagggagaaaatgtggaatccaattcgctccactgtttgagtatagacattggaaaaggccctcttgttccactaccacaaat |
28897842 |
T |
|
| Q |
575 |
acctgaacaataccaaatggaaatatcaggattctccactccctttctt |
623 |
Q |
| |
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||| ||||| | |||||| | |||||||||| ||||||||||||||||| |
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| T |
28897843 |
acccgaacagtgccaaataggaatatcaggactctccactccctttctt |
28897891 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 130; E-Value: 5e-67
Query Start/End: Original strand, 263 - 633
Target Start/End: Original strand, 28930605 - 28930970
Alignment:
| Q |
263 |
aggataaagtact---ttttcattagcagcatttgaaacaagcagctatttgtagagaa--caaaagtatataactctactaattaactatcaacactga |
357 |
Q |
| |
|
||||||||||||| |||||| ||||||||||| ||||| |||||||||| | | ||| |||||||||||| |||||||| ||| ||||||||| |
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| T |
28930605 |
aggataaagtactaccttttcactagcagcatttcaaacaggcagctatttttggtgaaaccaaaagtatatacctctactattta----tcaacactg- |
28930699 |
T |
|
| Q |
358 |
tgtgatgtactcaatagaggtgatttcccttcatat-tgatttactttccctttgggggaaaaaagagcccaagtgcatccctcagaagcattgcctctc |
456 |
Q |
| |
|
||||| || ||||||||| |||||||||||||| | | |||||||||| | | |||| |||||||||| |||||||||||||| ||| |||||||||| |
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|
| T |
28930700 |
-gtgatatattcaatagagatgatttcccttcatttattatttactttcacatcgggg-aaaaaagagct-aagtgcatccctcaaaagtattgcctctc |
28930796 |
T |
|
| Q |
457 |
tttcactctcatctgtcttccagaccttgaattctaagggagaaaatgtggaatccaattcgctccagtgttttagtacagacattggaaaaggcccttt |
556 |
Q |
| |
|
||||||||||| ||||||||||||||||| | | |||||||||| |||||| | ||||||||||| |||| ||||||||||||| |||||||||||| |
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|
| T |
28930797 |
tttcactctcacctgtcttccagaccttgtagtttaagggagaagatgtgg---cagattcgctccagcgtttgagtacagacattgaaaaaggcccttt |
28930893 |
T |
|
| Q |
557 |
tgtttcactaccacgaatacctgaacaataccaaatggaaatatcaggattctccactccctttcttgctgctgaag |
633 |
Q |
| |
|
|||| ||| ||| |||||||| ||||||| ||||||||||| ||||| | || |||||||||||||| ||||||||| |
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|
| T |
28930894 |
tgttccaccacctcgaatacccgaacaatgccaaatggaaacatcagaactcaccactccctttctttctgctgaag |
28930970 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 262 - 623
Target Start/End: Original strand, 28912041 - 28912396
Alignment:
| Q |
262 |
aaggataaagtactttttcattagcagcatttgaaacaagcagctatttgtagagaacaaaagtatataact--ctactaattaactatcaacactgatg |
359 |
Q |
| |
|
|||||||||||||||||| | ||||||||||| ||||| |||| ||||| || ||||||| |||||| | ||||| |||| ||||||||| | |
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|
| T |
28912041 |
aaggataaagtacttttttactagcagcatttcaaacagtcagccatttggtgaaaacaaaattatatatataactactgatta----tcaacactg--g |
28912134 |
T |
|
| Q |
360 |
tgatgtactcaatagaggtgatttcccttcatattgatttactttccctttgggggaaaaaagagcccaagtgcatccctcagaagcattgcctctcttt |
459 |
Q |
| |
|
||||||| | | ||||| |||||||||||||| |||||||||||| | || ||||||||||||| |||||||||||||||||||||||||||||||| |
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|
| T |
28912135 |
tgatgtatt-agtagagatgatttcccttcattttgatttactttgacatt-agggaaaaaagagcttaagtgcatccctcagaagcattgcctctcttt |
28912232 |
T |
|
| Q |
460 |
cactctcatctgtcttccagaccttgaattctaagggagaaaatgtggaatccaattcgctccagtgttttagtacagacattggaaaaggcccttttgt |
559 |
Q |
| |
|
||||||| | ||||||||||||||||| |||||||||| | |||||||||||||||| ||||||||||| ||||||| |||||||||||||||| |||| |
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|
| T |
28912233 |
cactctcgcccgtcttccagaccttgaagtctaagggagcatatgtggaatccaattcactccagtgtttgagtacagtcattggaaaaggccctcttgt |
28912332 |
T |
|
| Q |
560 |
ttcactaccacgaatacctgaacaataccaaatggaaatatcaggattctccactccctttctt |
623 |
Q |
| |
|
| ||| ||||||| ||| ||||| |||||||| | ||||||| | ||||| ||||||||||| |
|
|
| T |
28912333 |
tccacagccacgaacacccgaacagtaccaaataggaatatcaatactctccgctccctttctt |
28912396 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 118; E-Value: 7e-60
Query Start/End: Original strand, 414 - 623
Target Start/End: Original strand, 28921683 - 28921892
Alignment:
| Q |
414 |
ggaaaaaagagcccaagtgcatccctcagaagcattgcctctctttcactctcatctgtcttccagaccttgaattctaagggagaaaatgtggaatcca |
513 |
Q |
| |
|
|||||||||||| |||||||||||| ||||||||||||||||||||||||||| | ||||||||||||||||| |||||||||| | |||||||||||| |
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|
| T |
28921683 |
ggaaaaaagagcttaagtgcatcccttagaagcattgcctctctttcactctcacccgtcttccagaccttgaagtctaagggagcatatgtggaatcca |
28921782 |
T |
|
| Q |
514 |
attcgctccagtgttttagtacagacattggaaaaggcccttttgtttcactaccacgaatacctgaacaataccaaatggaaatatcaggattctccac |
613 |
Q |
| |
|
|||| ||||||||||| ||||||| |||||||||||||||| ||||| ||| ||||||| ||| ||||| |||||||| | ||||||| | ||||||| |
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|
| T |
28921783 |
attcactccagtgtttgagtacagtcattggaaaaggccctcttgttccacagccacgaacacccgaacagtaccaaataggaatatcaatactctccac |
28921882 |
T |
|
| Q |
614 |
tccctttctt |
623 |
Q |
| |
|
|||||||||| |
|
|
| T |
28921883 |
tccctttctt |
28921892 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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