View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19207_low_22 (Length: 249)
Name: NF19207_low_22
Description: NF19207
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19207_low_22 |
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Alignment Details
Target: chr5 (Bit Score: 210; Significance: 1e-115; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 29 - 242
Target Start/End: Original strand, 43019711 - 43019924
Alignment:
| Q |
29 |
caacggtacagttgttgttcttcgcctatgctgccaccaactcatacctcggccgtctccttttgaaatgtcgatcatcgtcattgctgtcttcattttt |
128 |
Q |
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| T |
43019711 |
caacggtacagttgttgttcttcgcctatgctgccaccaactcatacctcggccgtctccttttgaaatgtcgatcatcgtcattgttgtcttcattttt |
43019810 |
T |
|
| Q |
129 |
tctcacttcgtaataaccgtttgatgttgcggaagaacgtggtcgtttgcattcgagtttgcatgaacgtggtggctcttcttgcataggtcgttgacgg |
228 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43019811 |
tctcacttcgtaataaccgtttgatgttgcggaagaacgtggtcgtttgcattcgagtttgcatgaacgtggtggctcttcttgcataggtcgttgacgg |
43019910 |
T |
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| Q |
229 |
tggtgttgatgatg |
242 |
Q |
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|||||||||||||| |
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| T |
43019911 |
tggtgttgatgatg |
43019924 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 39 - 157
Target Start/End: Original strand, 35058367 - 35058482
Alignment:
| Q |
39 |
gttgttgttcttcgcctatgctgccaccaactcatacctcggccgtctccttttgaaatgtcgatcatcgtcattgctgtcttcattttttctcacttcg |
138 |
Q |
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| T |
35058367 |
gttgttgctcttcacctatgcttccaccaactcatacctcggccgtctccttttgaaatgtcgatcatcgtc---tctgtcttcgttttttctcacttcg |
35058463 |
T |
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| Q |
139 |
taataaccgtttgatgttg |
157 |
Q |
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| T |
35058464 |
taataacagtttgatgttg |
35058482 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 68 - 107
Target Start/End: Original strand, 42807763 - 42807802
Alignment:
| Q |
68 |
actcatacctcggccgtctccttttgaaatgtcgatcatc |
107 |
Q |
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| T |
42807763 |
actcatacctcgaccgtctccttttgaaatgtcgatcatc |
42807802 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 123 - 160
Target Start/End: Original strand, 42807839 - 42807876
Alignment:
| Q |
123 |
attttttctcacttcgtaataaccgtttgatgttgcgg |
160 |
Q |
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|||| ||||||||||||||||||||||||||||||||| |
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| T |
42807839 |
atttcttctcacttcgtaataaccgtttgatgttgcgg |
42807876 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 192 - 221
Target Start/End: Original strand, 35058499 - 35058528
Alignment:
| Q |
192 |
tgaacgtggtggctcttcttgcataggtcg |
221 |
Q |
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| T |
35058499 |
tgaacgtggtggctcttcttgcataggtcg |
35058528 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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