View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19207_low_25 (Length: 246)

Name: NF19207_low_25
Description: NF19207
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19207_low_25
NF19207_low_25
[»] chr4 (8 HSPs)
chr4 (3-239)||(21833773-21834009)
chr4 (38-159)||(1755035-1755156)
chr4 (54-159)||(641483-641588)
chr4 (46-187)||(3438082-3438223)
chr4 (3-159)||(55908117-55908273)
chr4 (3-187)||(1600930-1601114)
chr4 (3-115)||(53761252-53761364)
chr4 (46-159)||(547470-547583)
[»] chr3 (3 HSPs)
chr3 (3-193)||(51763835-51764025)
chr3 (63-239)||(13470184-13470360)
chr3 (81-222)||(514192-514333)
[»] chr6 (2 HSPs)
chr6 (3-223)||(6588718-6588941)
chr6 (62-230)||(6416446-6416614)
[»] chr5 (4 HSPs)
chr5 (3-239)||(28532182-28532424)
chr5 (38-159)||(32268029-32268150)
chr5 (3-239)||(41888937-41889176)
chr5 (45-150)||(41900966-41901071)
[»] chr1 (2 HSPs)
chr1 (2-159)||(19467893-19468050)
chr1 (62-159)||(17352198-17352295)
[»] chr7 (3 HSPs)
chr7 (3-213)||(10169525-10169735)
chr7 (3-213)||(10177050-10177260)
chr7 (3-239)||(10615064-10615300)
[»] chr2 (1 HSPs)
chr2 (3-159)||(1037053-1037209)
[»] chr8 (1 HSPs)
chr8 (45-105)||(27922699-27922759)


Alignment Details
Target: chr4 (Bit Score: 229; Significance: 1e-126; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 3 - 239
Target Start/End: Original strand, 21833773 - 21834009
Alignment:
Q  3 tgagtttgaagggtttgacttgtcttagtttgcgttctttgtatatctcggatgagttactctactctattgcaagggaaggtcttcctttaacgaggct 102  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21833773 tgagtttgaagggtttgacttgtcttagtttgcgttctttgtatatcttggatgagttactctactctattgcaagggaaggtcttcctttaacgaggct 21833872  T
Q  103 tgtccttcgaaattgcaccggctatagttatgatggaatcttttgtttgttatccaaaggtcatggtgtccaacatttggatcttgaagataacatgttt 202  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21833873 tgtccttcgaaaatgcaccggctatagttatgatggaatcttttgtttgttatccaaaggtcatggtgtccaacatttggatcttgaagataacatgttt 21833972  T
Q  203 ctgaatgatcaacatgttgtccagttgtattcatttc 239  Q
    |||||||||||||||||||||||||||||||||||||    
T  21833973 ctgaatgatcaacatgttgtccagttgtattcatttc 21834009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 38 - 159
Target Start/End: Complemental strand, 1755156 - 1755035
Alignment:
Q  38 tctttgtatatctcggatgagttactctactctattgcaagggaaggtcttcctttaacgaggcttgtccttcgaaattgcaccggctatagttatgatg 137  Q
    |||||| |||||||||||||| | || ||||||||||||| | || |||||||||| | ||||||||| ||| || ||||||||||||||||||||||||    
T  1755156 tctttgaatatctcggatgagctgctgtactctattgcaatgaaaagtcttcctttgaagaggcttgtgcttggacattgcaccggctatagttatgatg 1755057  T
Q  138 gaatcttttgtttgttatccaa 159  Q
    |||||   ||||||||||||||    
T  1755056 gaatccgatgtttgttatccaa 1755035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 54 - 159
Target Start/End: Complemental strand, 641588 - 641483
Alignment:
Q  54 atgagttactctactctattgcaagggaaggtcttcctttaacgaggcttgtccttcgaaattgcaccggctatagttatgatggaatcttttgtttgtt 153  Q
    ||||||| |||| ||||||||||| | |||| |||||||| ||||| ||||||||  | |||||||||||||||| ||||||||||||||| ||||||||    
T  641588 atgagtttctctcctctattgcaatgaaaggccttcctttgacgagacttgtcctctgcaattgcaccggctatacttatgatggaatcttgtgtttgtt 641489  T
Q  154 atccaa 159  Q
    ||||||    
T  641488 atccaa 641483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 46 - 187
Target Start/End: Original strand, 3438082 - 3438223
Alignment:
Q  46 tatctcggatgagttactctactctattgcaagggaaggtcttcctttaacgaggcttgtccttcgaaattgcaccggctatagttatgatggaatcttt 145  Q
    |||| ||||||| ||||| | |||||||||||  | |||||||||||| |  ||||||||||| |  |||||||||||||||||||||| || |||||||    
T  3438082 tatcccggatgaattactttcctctattgcaattggaggtcttcctttgagaaggcttgtcctccacaattgcaccggctatagttatgctgaaatcttt 3438181  T
Q  146 tgtttgttatccaaaggtcatggtgtccaacatttggatctt 187  Q
    | | ||||||||||  ||||  || | |||||||||||||||    
T  3438182 tctctgttatccaagtgtcaatgtatacaacatttggatctt 3438223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 3 - 159
Target Start/End: Original strand, 55908117 - 55908273
Alignment:
Q  3 tgagtttgaagggtttgacttgtcttagtttgcgttctttgtatatctcggatgagttactctactctattgcaagggaaggtcttcctttaacgaggct 102  Q
    |||||||||| || || |||||||||| ||||   ||||||   ||||||||||| || || |  |||||||||| || |||||||||||| |  || ||    
T  55908117 tgagtttgaatggcttaacttgtcttaatttgtcgtctttgcgcatctcggatgaattgcttttttctattgcaatgggaggtcttcctttgagaagact 55908216  T
Q  103 tgtccttcgaaattgcaccggctatagttatgatggaatcttttgtttgttatccaa 159  Q
    |||||| | ||||||||||||||||| ||||| |||||| |  | ||||||||||||    
T  55908217 tgtcctccaaaattgcaccggctataattatgttggaatatactctttgttatccaa 55908273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 187
Target Start/End: Complemental strand, 1601114 - 1600930
Alignment:
Q  3 tgagtttgaagggtttgacttgtcttagtttgcgttctttgtatatctcggatgagttactctactctattgcaagggaaggtcttcctttaacgaggct 102  Q
    ||||||||||||||||||||||||||   |||   | || |  |||||||||| |||| |||| ||||||||||| ||||  || |||||| | ||||||    
T  1601114 tgagtttgaagggtttgacttgtcttgaattgtcctattggcgtatctcggatcagttgctctcctctattgcaaaggaaaatcctcctttgaggaggct 1601015  T
Q  103 tgtccttcgaaattgcaccggctatagttatgatggaatcttttgtttgttatccaaaggtcatggtgtccaacatttggatctt 187  Q
    || |||   | ||| ||| ||||||||||||  |||| |  || |||||||||||||  ||||  || |||||||||||| ||||    
T  1601014 tgacctcgcatatttcactggctatagttatattggagtagttagtttgttatccaagtgtcaacgtatccaacatttggttctt 1600930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 115
Target Start/End: Original strand, 53761252 - 53761364
Alignment:
Q  3 tgagtttgaagggtttgacttgtcttagtttgcgttctttgtatatctcggatgagttactctactctattgcaagggaaggtcttcctttaacgaggct 102  Q
    ||||||||||||||||||||| ||||| |||||    |||    || || ||| |||| |||||||||||||||| |||| |||||||||| || || ||    
T  53761252 tgagtttgaagggtttgacttctcttaatttgcagcatttaggaatttcagataagttgctctactctattgcaaaggaatgtcttcctttgacaagtct 53761351  T
Q  103 tgtccttcgaaat 115  Q
    |||||||| ||||    
T  53761352 tgtccttcaaaat 53761364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 46 - 159
Target Start/End: Complemental strand, 547583 - 547470
Alignment:
Q  46 tatctcggatgagttactctactctattgcaagggaaggtcttcctttaacgaggcttgtccttcgaaattgcaccggctatagttatgatggaatcttt 145  Q
    ||||||||||  ||| |||| ||||||||||| ||||| | ||||||| |  | ||||||||| | ||||||   |||||||||||||| |||||| | |    
T  547583 tatctcggatatgttgctctcctctattgcaatggaagctattcctttgagaaagcttgtcctccaaaattgtttcggctatagttatgctggaatatct 547484  T
Q  146 tgtttgttatccaa 159  Q
    ||||| || |||||    
T  547483 tgttttttgtccaa 547470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 67; Significance: 7e-30; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 3 - 193
Target Start/End: Original strand, 51763835 - 51764025
Alignment:
Q  3 tgagtttgaagggtttgacttgtcttagtttgcgttctttgtatatctcggatgagttactctactctattgcaagggaaggtcttcctttaacgaggct 102  Q
    ||||||||||||||||||||| ||||  ||||     |||| | ||||| |||||||| |||||||| ||||||||||||||||||| ||| |  |||||    
T  51763835 tgagtttgaagggtttgacttctcttgatttgaagcgtttgaaaatctctgatgagttgctctactcgattgcaagggaaggtcttcttttgaaaaggct 51763934  T
Q  103 tgtccttcgaaattgcaccggctatagttatgatggaatcttttgtttgttatccaaaggtcatggtgtccaacatttggatcttgaagat 193  Q
    |||||||| || |||||| ||||||||||||| ||||||| |||||||| |||||||  ||||  || |  |||||||||||||| |||||    
T  51763935 tgtccttcaaatttgcacgggctatagttatgctggaatcatttgtttggtatccaactgtcaacgtttgaaacatttggatcttcaagat 51764025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 63 - 239
Target Start/End: Original strand, 13470184 - 13470360
Alignment:
Q  63 tctactctattgcaagggaaggtcttcctttaacgaggcttgtccttcgaaattgcaccgg---ctatagttatgatggaatcttttgtttgttatccaa 159  Q
    |||||| |||||||||||||||||||||||| |||||| ||| ||| ||| ||||    ||   | ||||||||| |||||| ||| |||||||||||||    
T  13470184 tctactgtattgcaagggaaggtcttcctttgacgaggtttgccctccgacattgttttggcccccatagttatgctggaatatttcgtttgttatccaa 13470283  T
Q  160 aggtcatggtgtccaacatttggatcttgaagataacatgtttctgaatgatcaacatgttgtccagttgtattcatttc 239  Q
      |||| ||  |||||||||| ||||||||   |    ||||||||||||||||||||||| |||| |||| ||| ||||    
T  13470284 gtgtcaaggcatccaacatttagatcttgagctt---ttgtttctgaatgatcaacatgttctccaattgtcttcgtttc 13470360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 81 - 222
Target Start/End: Original strand, 514192 - 514333
Alignment:
Q  81 aaggtcttcctttaacgaggcttgtccttcgaaattgcaccggctatagttatgatggaatcttttgtttgttatccaaaggtcatggtgtccaacattt 180  Q
    ||||||||||||||| ||| ||||| || || | ||| ||||||||  | |||||||||||||||| ||||||||||||| || |  |  | ||||||||    
T  514192 aaggtcttcctttaaggagacttgtgctccgtagttgtaccggctacggctatgatggaatcttttctttgttatccaaatgtaaatggatacaacattt 514291  T
Q  181 ggatcttgaagataacatgtttctgaatgatcaacatgttgt 222  Q
    | ||||| |||||  | | || || |||||||||||||||||    
T  514292 gaatcttcaagatgcccttttcctcaatgatcaacatgttgt 514333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 66; Significance: 3e-29; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 3 - 223
Target Start/End: Original strand, 6588718 - 6588941
Alignment:
Q  3 tgagtttgaagggtttgacttgtcttagtttgcgttctttgtatatctcggatgagttactctactctattgcaagggaaggtcttcctttaacgaggct 102  Q
    ||||||||||| |||||||||||||| |||||  | ||||| ||||||| |||||||| |||||| ||||||||||| || |||||||||| || || ||    
T  6588718 tgagtttgaagagtttgacttgtcttggtttgtctgctttgaatatctccgatgagttgctctacactattgcaaggaaacgtcttcctttgacaagact 6588817  T
Q  103 tgtccttcgaaattgcaccggctatagttatgatggaatcttttgtttgttatccaaaggtcat---ggtgtccaacatttggatcttgaagataacatg 199  Q
    ||| ||   | ||||  | |||  |  |||| ||||| |||||| |||||||||||   |||||    || ||||||||||||||||||||||||| | |    
T  6588818 tgtactcaaatattgttctggccgttattataatggactcttttatttgttatccatgtgtcataaaagtttccaacatttggatcttgaagataatagg 6588917  T
Q  200 tttctgaatgatcaacatgttgtc 223  Q
    ||||||||||||||||||||||||    
T  6588918 tttctgaatgatcaacatgttgtc 6588941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 62 - 230
Target Start/End: Complemental strand, 6416614 - 6416446
Alignment:
Q  62 ctctactctattgcaagggaaggtcttcctttaacgaggcttgtccttcgaaattgcaccgg---ctatagttatgatggaatcttttgtttgttatcca 158  Q
    ||||||| |||||||||||||||||||||||| |||||| ||  ||| ||| ||||    ||   | |||||| || |||||| ||| ||||||||||||    
T  6416614 ctctactgtattgcaagggaaggtcttcctttgacgaggtttaccctccgacattgttttggcccccatagttctgctggaatatttcgtttgttatcca 6416515  T
Q  159 aaggtcatggtgtccaacatttggatcttgaagataacatgtttctgaatgatcaacatgttgtccagttgt 230  Q
    |  |||| ||  ||||||||||| ||||||||  |     |||||| |||||||||||||||||||| ||||    
T  6416514 agtgtcaaggcatccaacatttgaatcttgaactt---tcgtttcttaatgatcaacatgttgtccaattgt 6416446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 60; Significance: 1e-25; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 3 - 239
Target Start/End: Complemental strand, 28532424 - 28532182
Alignment:
Q  3 tgagtttgaagggtttgacttgtcttagtttgcgttctttgtatatctcggatgagttactctactctattgcaagggaaggtcttcctttaacgaggct 102  Q
    ||||||| |||||||||||||||||| |||||  || |||  |||| || |||||||| |||||| |||||||||||| |||||||||||| |  | |||    
T  28532424 tgagtttcaagggtttgacttgtcttggtttgtattattttaatatttctgatgagttgctctacactattgcaaggggaggtcttcctttgataaagct 28532325  T
Q  103 tgtccttcgaaattgcaccggctatagttatgatggaatcttttgtttgttatccaa------aggtcatggtgtccaacatttggatcttgaagataac 196  Q
    ||||||   |||| ||   |||||||||||||| ||| |||||||||||||||||||      | |||| ||| ||| ||||||| || ||| |  ||      
T  28532324 tgtcctaaaaaatcgctggggctatagttatgacggactcttttgtttgttatccaagtgtcgacgtcaaggtttccgacatttgtatattggacttagt 28532225  T
Q  197 atgtttctgaatgatcaacatgttgtccagttgtattcatttc 239  Q
    | |||||||||||||||||||||| ||||||||| ||| ||||    
T  28532224 aagtttctgaatgatcaacatgttatccagttgtcttcgtttc 28532182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 38 - 159
Target Start/End: Complemental strand, 32268150 - 32268029
Alignment:
Q  38 tctttgtatatctcggatgagttactctactctattgcaagggaaggtcttcctttaacgaggcttgtccttcgaaattgcaccggctatagttatgatg 137  Q
    |||||| ||||||| |||||||| |||| ||||||||||    || |||||||||| ||||||||||| || | | |||||||||||||||| |||  ||    
T  32268150 tctttgaatatctcagatgagttgctctcctctattgcataccaatgtcttcctttgacgaggcttgttctccaagattgcaccggctatagctattctg 32268051  T
Q  138 gaatcttttgtttgttatccaa 159  Q
    ||||| ||| |||  |||||||    
T  32268050 gaatcctttctttactatccaa 32268029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 3 - 239
Target Start/End: Original strand, 41888937 - 41889176
Alignment:
Q  3 tgagtttgaagggtttgacttgtcttagtttgcgttctttgtatatctcggatgagttactctactctattgcaagggaaggtcttcctttaacgaggc- 101  Q
    |||||||||||   ||||||||||||  ||||  ||||||| ||||||| |||||| | || | ||||||||||| | ||||| ||| ||| || |||      
T  41888937 tgagtttgaagtacttgacttgtcttgatttgttttctttgaatatctccgatgagatgctttcctctattgcaatgcaaggttttcttttgactaggtg 41889036  T
Q  102 -ttgtcctt-cgaaattgcaccggctatagttatgatggaatcttttgtttgttatccaaaggtcatggtgtccaacatttggatcttgaagataacatg 199  Q
     || ||| | | |||||||||||||| |||||||| |||||||||||||||  |||||||  || |   | |||||| |||||||||| || |||   |     
T  41889037 gttctccctacaaaattgcaccggctttagttatgctggaatcttttgtttactatccaagtgtgaacatatccaacttttggatcttcaaaatattgtt 41889136  T
Q  200 tttctgaatgatcaacatgttgtccagttgtattcatttc 239  Q
    ||||||||| || ||||||||||  |||||| ||||||||    
T  41889137 tttctgaatcataaacatgttgtggagttgtcttcatttc 41889176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 45 - 150
Target Start/End: Original strand, 41900966 - 41901071
Alignment:
Q  45 atatctcggatgagttactctactctattgcaagggaaggtcttcctttaacgaggcttgtccttcgaaattgcaccggctatagttatgatggaatctt 144  Q
    ||||||| |||| ||| |||  |||||||||||   ||||||| ||||| || |||||||| || | |||||||||||| |||||||||  ||||||  |    
T  41900966 atatctcagatgtgtttctcatctctattgcaatccaaggtctacctttgactaggcttgttctccaaaattgcaccggttatagttattctggaattat 41901065  T
Q  145 ttgttt 150  Q
    ||||||    
T  41901066 ttgttt 41901071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 54; Significance: 4e-22; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 2 - 159
Target Start/End: Original strand, 19467893 - 19468050
Alignment:
Q  2 ctgagtttgaagggtttgacttgtcttagtttgcgttctttgtatatctcggatgagttactctactctattgcaagggaaggtcttcctttaacgaggc 101  Q
    |||||||||||||||||||||| ||||| || | | | | || ||||||| |||||  | ||||||||||||||| ||||||| || ||||| |||||||    
T  19467893 ctgagtttgaagggtttgacttctcttacttggtggtttctgaatatctctgatgaaatgctctactctattgcacgggaagggctacctttgacgaggc 19467992  T
Q  102 ttgtccttcgaaattgcaccggctatagttatgatggaatcttttgtttgttatccaa 159  Q
    |||||||   | |||||   ||| |||| |||| ||||||||||||||||||||||||    
T  19467993 ttgtcctcaaatattgctttggccatagctatgctggaatcttttgtttgttatccaa 19468050  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 62 - 159
Target Start/End: Complemental strand, 17352295 - 17352198
Alignment:
Q  62 ctctactctattgcaagggaaggtcttcctttaacgaggcttgtccttcgaaattgcaccggctatagttatgatggaatcttttgtttgttatccaa 159  Q
    |||| ||||||||||| ||| ||| ||||||| | ||| |||||||||| | ||| ||| ||||| ||||||| |||||  |||| ||||||||||||    
T  17352295 ctctcctctattgcaaaggagggttttcctttcaggagacttgtccttcaatattccactggctacagttatgctggaactttttctttgttatccaa 17352198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 51; Significance: 2e-20; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 3 - 213
Target Start/End: Original strand, 10169525 - 10169735
Alignment:
Q  3 tgagtttgaagggtttgacttgtcttagtttgcgttctttgtatatctcggatgagttactctactctattgcaagggaaggtcttcctttaacgaggct 102  Q
    ||||||||||||||||||||| ||||  |||| | ||| || ||||||| |||||  | |||||||||||||| ||||||||||| ||||| ||||||||    
T  10169525 tgagtttgaagggtttgacttctctttctttgagatctctggatatctctgatgaaatgctctactctattgcgagggaaggtctacctttgacgaggct 10169624  T
Q  103 tgtccttcgaaattgcaccggctatagttatgatggaatcttttgtttgttatccaaaggtcatggtgtccaacatttggatcttgaagataacatgttt 202  Q
    || |||  || |||||   | ||| || |||| ||||||||||||||||| ||| ||  |||  ||| | |||||  ||||||||||| ||  ||| ||     
T  10169625 tgccctcagatattgcttggactaaagctatgctggaatcttttgtttgtcatctaagtgtcgaggtttgcaacacatggatcttgaacatgccattttc 10169724  T
Q  203 ctgaatgatca 213  Q
    |||||||||||    
T  10169725 ctgaatgatca 10169735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 3 - 213
Target Start/End: Original strand, 10177050 - 10177260
Alignment:
Q  3 tgagtttgaagggtttgacttgtcttagtttgcgttctttgtatatctcggatgagttactctactctattgcaagggaaggtcttcctttaacgaggct 102  Q
    ||||||||||||||||||||| ||||  |||| | ||| || ||||||| |||||  | |||||||||||||| ||||||||||| ||||| ||||||||    
T  10177050 tgagtttgaagggtttgacttctctttctttgagatctctggatatctctgatgaaatgctctactctattgcgagggaaggtctacctttgacgaggct 10177149  T
Q  103 tgtccttcgaaattgcaccggctatagttatgatggaatcttttgtttgttatccaaaggtcatggtgtccaacatttggatcttgaagataacatgttt 202  Q
    || |||  || |||||   | ||| || |||| ||||||||||||||||| ||| ||  |||  ||| | |||||  ||||||||||| ||  ||| ||     
T  10177150 tgccctcagatattgcttggactaaagctatgctggaatcttttgtttgtcatctaagtgtcgaggtttgcaacacatggatcttgaacatgccattttc 10177249  T
Q  203 ctgaatgatca 213  Q
    |||||||||||    
T  10177250 ctgaatgatca 10177260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 3 - 239
Target Start/End: Complemental strand, 10615300 - 10615064
Alignment:
Q  3 tgagtttgaagggtttgacttgtcttagtttgcgttctttgtatatctcggatgagttactctactctattgcaagggaaggtcttcctttaacgaggct 102  Q
    ||||||||||||| ||||||||||||  |||||  | | || |||||||  || | ||  | ||||||||||||||||  ||||||||||| |||||| |    
T  10615300 tgagtttgaagggcttgacttgtcttgatttgcagtttatgaatatctcaaataacttgttttactctattgcaagggtgggtcttcctttgacgaggtt 10615201  T
Q  103 tgtccttcgaaattgcaccggcta---tagttatgatggaatcttttgtttgttatccaaaggtcatggtgtccaacatttggatcttgaagataacatg 199  Q
    |  ||| ||| ||||   |||| |   |||||||| |||||||| |||||| ||||||||  |||| ||  ||||||||||||||||||||  |     |    
T  10615200 taccctccgacattgtttcggccaccatagttatgctggaatctattgtttattatccaagtgtcaaggcttccaacatttggatcttgaacttcc---g 10615104  T
Q  200 tttctgaatgatcaacatgttgtccagttgtattcatttc 239  Q
    |||||||||||||||||||||||||| |||| ||||||||    
T  10615103 tttctgaatgatcaacatgttgtccaattgtcttcatttc 10615064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 159
Target Start/End: Original strand, 1037053 - 1037209
Alignment:
Q  3 tgagtttgaagggtttgacttgtcttagtttgcgttctttgtatatctcggatgagttactctactctattgcaagggaaggtcttcctttaacgaggct 102  Q
    |||||||||| || || |||||||||| ||||   ||||||   || |||||||| || || |  |||||||||| || |||||||||||| |  || ||    
T  1037053 tgagtttgaatggcttaacttgtcttaatttgtcatctttgcgcatttcggatgaattgcttttttctattgcaatgggaggtcttcctttgagaagact 1037152  T
Q  103 tgtccttcgaaattgcaccggctatagttatgatggaatcttttgtttgttatccaa 159  Q
    |||||| | |||||||||| |||||| ||||| |||||| |  | ||||||||||||    
T  1037153 tgtcctccaaaattgcaccagctataattatgttggaatatactctttgttatccaa 1037209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 105
Target Start/End: Complemental strand, 27922759 - 27922699
Alignment:
Q  45 atatctcggatgagttactctactctattgcaagggaaggtcttcctttaacgaggcttgt 105  Q
    |||||||||||||||| |||| ||||||||| |  ||| |||| ||||| |||||||||||    
T  27922759 atatctcggatgagttgctctcctctattgccaccgaacgtctacctttgacgaggcttgt 27922699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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