View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19207_low_4 (Length: 521)
Name: NF19207_low_4
Description: NF19207
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19207_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 231; Significance: 1e-127; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 11 - 297
Target Start/End: Original strand, 35379185 - 35379471
Alignment:
| Q |
11 |
gaatagggggagaatccgatgttcaaacctcggtccttacatactacaatgtcccaactaaactatgttcacagggacgaataaaatactaatggaaata |
110 |
Q |
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| T |
35379185 |
gaataggtggagaatccgatgttcaaatctcggtccttatatactacaatgtcccaactaaactatgttcacagggacgaataaaatactaatggaaata |
35379284 |
T |
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| Q |
111 |
cacacgttttttaaccccaaaaacactcacgttttttaacctgaaaatttatggatatataagttggaggtaaaacaagctagaggaggcccctgattgt |
210 |
Q |
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| T |
35379285 |
cacacgttttttaaccccaaaaatactcacgttttttaacccgaaaatttatggatataaaagttggaggtaaaacaagctagaggaggcccctgattgt |
35379384 |
T |
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| Q |
211 |
ttgggagaatcgactgtttcgagatcaacagaactagttnnnnnnnngttttaaatttgttaattattgaagaaaaatacatatcta |
297 |
Q |
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| T |
35379385 |
ttgggagaatcaactgtttcgagatcaacagaactagttaaaaaaaagttttaaatttgttaattattgaagaaaaatatatatcta |
35379471 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 168; E-Value: 8e-90
Query Start/End: Original strand, 296 - 505
Target Start/End: Original strand, 35379795 - 35380003
Alignment:
| Q |
296 |
tagctatctacc-gactgctatggaatatgcatgatatggagggaccaatagtgaaatgcatggatgtgcatgtgatcaacataaagaaggtgaggggtt |
394 |
Q |
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| T |
35379795 |
tagctatctacccgactactacgcaatatgcatgat--ggagggaccaatagggaaatgcatggatgtgcatgtgatcaacataaagaaggtgaagggtt |
35379892 |
T |
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| Q |
395 |
ggtcagagtagcccccctccatttttactgaattaatctttcaccttctgctctttctttcttttagttaaagtatgttgtcacttaaaaagcagaatct |
494 |
Q |
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| T |
35379893 |
ggtcagaggagcccccctccatttttactgaattaatctttcaccttctgctctttctttcttttagttaaagtatgttgtcacttaaaaagcagaatct |
35379992 |
T |
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| Q |
495 |
ttccaaaaaag |
505 |
Q |
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| T |
35379993 |
ttccaaaaaag |
35380003 |
T |
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