View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19208_high_1 (Length: 239)
Name: NF19208_high_1
Description: NF19208
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19208_high_1 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 102; Significance: 9e-51; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 1 - 130
Target Start/End: Complemental strand, 52929 - 52800
Alignment:
| Q |
1 |
atatatgctgcatggaaataaataatatatacatttggcgtggaaaattttcaagtatgtctaaatggttgagcggtaagaatgggaatctgcattgcat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
52929 |
atatatgctgcatggaaataaataatatatacatgtggcgtggaaaattttcaagtatgtctaaatggttgagtggtaagaatgggaatctgcattgcat |
52830 |
T |
|
| Q |
101 |
aggcatttggttcaacactcagaacctatg |
130 |
Q |
| |
|
|| ||| |||| |||||||||||||||| |
|
|
| T |
52829 |
agatctttcgttccacactcagaacctatg |
52800 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 166 - 229
Target Start/End: Complemental strand, 52764 - 52701
Alignment:
| Q |
166 |
tagtttgagagattgcaaggtatttttggcaaagatcttacaaatggcctcggagctgatgatg |
229 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
52764 |
tagtttgagagattgcaaggtatttttggcaaagatcttgcaaatggcctcggagctgatgatg |
52701 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 167 - 229
Target Start/End: Original strand, 33311804 - 33311866
Alignment:
| Q |
167 |
agtttgagagattgcaaggtatttttggcaaagatcttacaaatggcctcggagctgatgatg |
229 |
Q |
| |
|
||||| ||||||||||||||||| |||||||||||| | |||||||| | | ||||||||||| |
|
|
| T |
33311804 |
agtttaagagattgcaaggtattgttggcaaagatcgtgcaaatggcattgaagctgatgatg |
33311866 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 126
Target Start/End: Original strand, 12037669 - 12037794
Alignment:
| Q |
1 |
atatatgctgcatggaaataaataatatatacatttggcgtggaaaattttcaagtatgtctaaatggttgagcggtaagaatgggaatctgcattgcat |
100 |
Q |
| |
|
|||||||||||| ||||||||||| ||||||| | ||||| | ||| ||||||||||||||||| ||| |||||||||||||||||| || ||||||| |
|
|
| T |
12037669 |
atatatgctgcacggaaataaatagtatatacttgtggcgcgaaaagttttcaagtatgtctaactggccgagcggtaagaatgggaaattgtattgcat |
12037768 |
T |
|
| Q |
101 |
aggcatttggttcaacactcagaacc |
126 |
Q |
| |
|
|| |||| ||||||||| |||||| |
|
|
| T |
12037769 |
agctctttgattcaacacttagaacc |
12037794 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 167 - 229
Target Start/End: Complemental strand, 39373548 - 39373486
Alignment:
| Q |
167 |
agtttgagagattgcaaggtatttttggcaaagatcttacaaatggcctcggagctgatgatg |
229 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| | |||||||||| |||| |||||||| |
|
|
| T |
39373548 |
agtttgagagattgcaaggtatttttggcaaagatcgtgcaaatggccttggaggtgatgatg |
39373486 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 167 - 229
Target Start/End: Original strand, 17051590 - 17051652
Alignment:
| Q |
167 |
agtttgagagattgcaaggtatttttggcaaagatcttacaaatggcctcggagctgatgatg |
229 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| | ||||||||||| ||| |||||||| |
|
|
| T |
17051590 |
agtttgagagattgcaaggtatttttggcaaagatcgtgcaaatggcctccgagttgatgatg |
17051652 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 47; Significance: 6e-18; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 167 - 229
Target Start/End: Original strand, 48534761 - 48534823
Alignment:
| Q |
167 |
agtttgagagattgcaaggtatttttggcaaagatcttacaaatggcctcggagctgatgatg |
229 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| | |||||||| || |||||||||||| |
|
|
| T |
48534761 |
agtttgagagattgcaaggtatttttggcaaagatcgtgcaaatggcttccgagctgatgatg |
48534823 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 31
Target Start/End: Original strand, 3850680 - 3850710
Alignment:
| Q |
1 |
atatatgctgcatggaaataaataatatata |
31 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
3850680 |
atatatgctgcatggaaataaataatatata |
3850710 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University