View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19209_high_21 (Length: 211)
Name: NF19209_high_21
Description: NF19209
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19209_high_21 |
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Alignment Details
Target: chr4 (Bit Score: 141; Significance: 4e-74; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 141; E-Value: 4e-74
Query Start/End: Original strand, 30 - 194
Target Start/End: Original strand, 52054132 - 52054296
Alignment:
| Q |
30 |
attgaaatagacaaaatgaaatatataaaaaagatgttattgatatgattaatgttttaaagttttgggtggtgatgcggcgtgttggtcacatgtctta |
129 |
Q |
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| T |
52054132 |
attgaaatagacaaaattaaatatataaaaaagatgtgattgatatgattaatgttttaaagttttgggtgatgatgcggcatgttggtcacatgtctta |
52054231 |
T |
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| Q |
130 |
actacttagtcattgttgttaaacaattcatcgtataattagagtatttgaccttcggtagtcac |
194 |
Q |
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|||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
52054232 |
actactaagtcattgttgttaaacaattcgtcgtataattagagtatttgaccttcggtagtcac |
52054296 |
T |
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